Citrobacter rodentium: ROD_37641
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Entry
ROD_37641 CDS
T01145
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta'-subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cro
Citrobacter rodentium
Pathway
cro03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cro00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ROD_37641 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cro03021
]
ROD_37641 (rpoC)
03400 DNA repair and recombination proteins [BR:
cro03400
]
ROD_37641 (rpoC)
Enzymes [BR:
cro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ROD_37641 (rpoC)
Transcription machinery [BR:
cro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ROD_37641 (rpoC)
DNA repair and recombination proteins [BR:
cro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ROD_37641 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
EAD9
Motif
Other DBs
NCBI-ProteinID:
CBG90469
UniProt:
D2TTH0
LinkDB
All DBs
Position
complement(3953472..3957695)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDANGEFVAHTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPDKKYEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGILMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNAKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKNDGEQVAGGETVANW
DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTTGGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKVTIESAGSSDFLEGEQVEYSRVKIANRDLEANGKVGATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPA
APQVTAEDASASLAELLNAGLGGSDNE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcatggtctttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggccttttctgcgcccgt
atctttgggccggtaaaagactacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgcggtgtgatctgtgagaagtgcggcgttgaagtgacccagactaaagtgcgccgtgag
cgtatgggccacatcgagctggcctctccgaccgcgcatatctggttcctgaaatcgctg
ccgtcccgtatcggcctgctgctcgatatgccgctgcgcgatatcgaacgcgtgctgtac
ttcgaatcctatgtggttatcgaaggcggtatgactaacctggagcgccagcagatcctg
actgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgacgccaagatg
ggcgccgaagctattcaggccctgctgaagagcatggatctggagcaggaatgtgaaacg
ctgcgtgaagagctgaacgaaaccaactccgaaaccaagcgtaagaagctgaccaagcgt
atcaagctgctggaagcgttcgtacagtccggcaacaagccggagtggatgattctgacc
gttctgccggttctgccgccggatctgcgtccgctggttccgctggatggcggtcgtttc
gcaacgtcggatctgaacgatctgtaccgtcgcgtgatcaaccgtaacaaccgtctgaag
cgtctgctggatctggctgcgccggatatcatcgtccgcaacgaaaaacgtatgctgcag
gaagcggtagacgccctgttggataacggtcgtcgcggtcgtgcgatcaccggttctaac
aagcgtcctctgaaatctttggccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgtaatcaccgtaggcccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcgctggagctgttcaaaccattc
atctacggcaagctggaactgcgtggcctcgccaccaccatcaaagccgcgaagaaaatg
gttgagcgtgaagaagctgtcgtctgggatatcctcgacgaagtcattcgcgaacacccg
gtactgctgaaccgtgcgccgaccctgcaccgtctgggtatccaggcgtttgagccggtg
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcatacaacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagcttgaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtctccggcgaacggcgaaccgatcatc
gttccgtctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgaccggtccgaaagaagctgagcgtatttatcgcgctggc
ctggcctctctgcatgcgcgcgttaaagtgcgtatcactgaatacgaaaaagatgctaac
ggcgaattcgttgcgcacaccagcctgaaagacacgaccgttggccgtgccattctgtgg
atgatcgtaccgaaaggtctgcctttctccatcgtcaaccaggcgctgggcaagaaagcg
atctccaaaatgctgaacacttgctaccgtattctgggcctgaaaccgaccgttattttt
gcggaccagacgatgtacaccggctttgcatatgcagcgcgttccggtgcgtccgttggt
atcgatgacatggtcatcccggataaaaaatacgagatcatctctgaggcggaagccgaa
gttgctgagatccaggagcagttccagtccggtctggttaccgcaggcgaacgctacaac
aaagttatcgatatctgggccgcggcgaacgatcgtgtatccaaagcgatgatggacaac
ctgcagactgaaaccgtgattaaccgtgacggccaggaagagcagcaggtttccttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgctgcgcagattcgtcagctg
gcggggatgcgtggtctgatggcgaagccggacggctcgatcatcgaaacgccgattacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctcgacgcacggtgcgcgt
aaaggtctggcggataccgcgctgaaaaccgcgaactccggttatctgacccgtcgtctg
gttgacgtggcgcaggatctggtagttaccgaagacgactgcggtacgcacgaaggcatc
ctgatgacgccggttatcgaaggcggcgacgttaaagaaccgctgcgcgatcgcgtactg
ggtcgtgtaaccgctgaagacgtgctgaagccgggcaccgcagacattctggttccgcgc
aatacgctgctgcacgagcagtggtgtgacctgctggaagagaactctgtcgacgcggtt
aaagtgcgttccgttgtatcctgtgacaccgactttggcgtctgcgcgcactgctacggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaggctatcggcgttatcgcggca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatcccgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatcaagctc
agcaacgcgaagtcggttgtgaactccagcggtaaactggttatcacttcccgtaacacc
gagctgaaactgatcgacgaattcggtcgtaccaaagagagctataaagtgccttacggc
gcggtgatggcgaagaatgatggcgagcaggttgccggcggtgaaaccgttgcaaactgg
gacccgcataccatgccggttatcaccgaagtcagcggcttcgttcgcttcaccgatatg
atcgacggccagaccattacgcgtcagaccgacgaactgaccggtctgtcttcgctggtg
gtgctggattctgctgaacgtactaccggtggtaaagatctgcgtccggcgctgaaaatc
gttgatgctcagggcaatgacgtgctgatcccgggtaccgatatgcctgcgcagtacttc
ctgccgggtaaagcgattgtacagctggaagatggcgtacagatcagctctggtgacacc
ctggcgcgtattccgcaggaatccggcggtaccaaggatatcaccggtggtctgccacgc
gttgccgacctgttcgaagcgcgtcgtccgaaagagccggcaatcctggcggaaatcagc
ggtatcatttccttcggtaaagagaccaaagggaaacgtcgtctggttatcaccccggta
gacggcagcgagccgtacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgagcgtgtagaacgtggtgacgtggtttccgacggtccggaagcgccgcacgacatt
ctgcgcctgcgtggcgttcatgctgtgactcgttacattgttaacgaagtccaggatgta
taccgtctgcagggcgttaagattaacgataagcacattgaagttatcgttcgtcagatg
ctgcgtaaagtgaccatcgaaagcgcaggtagttccgacttcctggaaggcgaacaggtt
gaatactcccgcgtcaagatcgctaaccgcgatctggaagcgaacggcaaagtgggcgca
acgttctcccgcgatctgctgggtatcaccaaagcgtctctggcaaccgaatcgttcatc
tctgccgcatcgttccaggagacgactcgtgtcctgaccgaagcagccgttgccggtaaa
cgcgacgaactgcgcggcctgaaagagaacgttatcgtgggtcgtctgatcccggcgggt
accggttatgcgtaccaccaggatcgtatgcgccgccgcgctgcgggtgaactcccggcc
gcgccgcaggtgactgcggaagacgcctccgccagcctggcggaactgctgaatgcaggt
ctgggcggttccgacaacgagtaa
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