Citrobacter rodentium: ROD_39321
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Entry
ROD_39321 CDS
T01145
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cro
Citrobacter rodentium
Pathway
cro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ROD_39321 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cro03019
]
ROD_39321 (recQ)
03400 DNA repair and recombination proteins [BR:
cro03400
]
ROD_39321 (recQ)
Enzymes [BR:
cro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ROD_39321 (recQ)
Messenger RNA biogenesis [BR:
cro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ROD_39321 (recQ)
DNA repair and recombination proteins [BR:
cro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ROD_39321 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
CBG90635
UniProt:
D2TV11
LinkDB
All DBs
Position
complement(4151514..4153343)
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AA seq
609 aa
AA seq
DB search
MAQAEVMNLESGAKQVLQETFGYQQFRPGQEAIIDTVMSGRDCLVVMPTGGGKSLCYQIP
ALLLNGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRSGKIRLLY
IAPERLMLDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMAL
TATADETTRLDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSRGLSAAAYHAGLENHVRADVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKRYDGLKDAQIAL
STIGRVNQRFGMGYVVEVIRGANNQRIRELGHDKLKVYGMGREKSHEHWVSVIRQLIHLG
LVMQNIAQHSALQMTDAARPVLRGEASLQLAVPRIVALKPRVMQKSFGGNYDRKLFSKLR
KLRKAIADEENIPPYVVFNDATLIEMAEQMPVSASEMLSVNGVGMRKLERFGKEFMALIR
AHVDGDDEE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcaggcggaagtgatgaatctggagtccggggctaaacaggttttgcaggaaacc
tttggctaccaacagttccgcccgggtcaggaagcgatcattgacaccgttatgtccgga
cgcgactgcctggtggtgatgccgaccggcggcggaaaatcgctgtgctatcaaattccc
gccttactgcttaatggcctgacggttgtggtatcgccgctgatctccctgatgaaagac
caggtcgatcagctgctggcgaacggcgtggcggcggcctgcctgaattcgacccagacg
cgtgaacagcagcttgaggtgatggccggatgccgcagcgggaaaatccgcctgctgtat
atcgcgcctgagcggctgatgctggataactttcttgagcatctggcgcactggaatccg
gcgttgctggccgtcgatgaggcgcactgtatttcccagtggggccacgatttccgcccg
gaatacgcggcgttaggccagcttcgccagcgcttccctgcgctaccgtttatggcgctg
accgccacggcggatgaaaccacccggctggatattgttcgtttattaggcctcaacgac
cccttaattcagatcagcagctttgaccggcccaacattcgctacatgctgatggagaaa
tttaagcctctcgaccagctgatgcgctacgtgcaggagcagcgcggcaagtccggcatc
atttactgcaatagccgggcgaaggtggaagacaccgctgcgcgcctgcaaagccggggg
ctcagcgcggcggcataccatgcggggctggagaatcacgttcgcgccgacgtgcaggag
aaattccagcgcgacgatctgcaaatcgtggtggcgaccgtggcgttcgggatgggcatc
aacaagcccaacgtgcgctttgtggtccattttgatattccgcgcaacattgaatcctac
tatcaggaaaccggtcgcgctggtcgcgacggtctgccagcggaagcgatgctgttttac
gatccggcggatatggcgtggctgcgccgctgtctggaagagaaaccgcagggccagttg
caggatatagagcgacacaagctcaatgcgatgggggcgtttgccgaggcgcagacctgt
cgccgtctggtgctgctgaactactttggcgaagggcggcaggagccgtgcggcaactgc
gatatctgtctcgatccgccaaaacgctatgatggcctgaaggatgcgcagattgccctc
tcgactatcgggcgggtaaatcagcgtttcgggatgggctacgtggttgaggtgatccgc
ggcgcgaacaaccagcgcatccgcgaactgggccacgacaagctcaaggtttacggcatg
ggtcgcgagaagagccatgagcactgggtcagcgtgatccgtcagctgattcatctggga
ctggtgatgcagaatatcgcccagcattcggcgttacaaatgaccgacgcggcgcgcccg
gtgctgcgcggcgaagcgtcgctgcagctggccgttccgcgtatcgtcgctcttaagccg
cgggtcatgcagaaatcctttggcggcaattacgatcgcaaactgttttccaaactgcgc
aagctgcgtaaagcgattgctgatgaagagaacatcccgccatacgtggtgtttaacgat
gctacgctgattgagatggcggaacagatgccggtttccgccagcgaaatgctcagcgtt
aacggcgtgggtatgcgcaaactggagcgcttcggtaaagagtttatggcgctgattcgc
gcccacgtcgacggtgacgatgaggagtag
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