Citrobacter rodentium: ROD_39381
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Entry
ROD_39381 CDS
T01145
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cro
Citrobacter rodentium
Pathway
cro03420
Nucleotide excision repair
cro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ROD_39381 (uvrD)
03430 Mismatch repair
ROD_39381 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cro03400
]
ROD_39381 (uvrD)
Enzymes [BR:
cro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ROD_39381 (uvrD)
DNA repair and recombination proteins [BR:
cro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ROD_39381 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
ROD_39381 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_11
AAA_22
DMP19
Motif
Other DBs
NCBI-ProteinID:
CBG90641
UniProt:
D2TV17
LinkDB
All DBs
Position
complement(4158762..4160924)
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AA seq
720 aa
AA seq
DB search
MDVSYLLDSLNDKQREAVAAPRSNMLVLAGAGSGKTRVLVHRIAWLLTVENNSPYSIMAV
TFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQL
RLLKRLMKAMNLDDKQWPPRQAMWYINGQKDEGLRPHHLQSFGNPVEQTWQKVYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWVRLLAGDT
GKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAQTIRLEQNYRSTSNILSAANALIENN
NGRLGKKLWTDGVDGEPISLYCAFNELDEARFVVNRIKTWQDNGGALEQCAILYRSNAQS
RVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGD
RTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQRFMELIDALAQETADMPLHVQ
TDRVIRDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSHAAL
EAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY
VGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRATVSRPVSHQRMG
TPIAENDTGYKLGQRVRHAKFGEGTIVNLEGSGEHSRLQVAFQGQGIKWLVAAYAKLETV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcttacctgcttgacagcctcaatgataaacagcgtgaagcggtggccgcg
ccacgtagcaacatgctggtgctcgcgggggcggggagcggtaaaacccgcgtgctggtg
caccgcattgcctggctgctgaccgtggagaacaactcgccctattcgattatggcggtg
accttcaccaacaaggcggcggcggagatgcgccaccgtatcggccaactgatgggcacc
agccagggcgggatgtgggtcggcaccttccacgggctggcgcaccggctgctgcgcgcg
caccatatggacgcgaacctgccgcaggatttccagatcctcgacagcgaagatcagctg
cgtttgctcaaacgtctgatgaaggcgatgaacctcgacgacaagcagtggccgccgcgc
caggcgatgtggtacatcaacggccagaaagatgaagggctgcgtccgcatcatctgcaa
agcttcggtaatccggtggaacagacctggcagaaggtgtatcaggcctatcaggaggcg
tgcgatcgcgccgggctggtggatttcgccgagctgctgctgcgcgcccatgagctgtgg
ctcaacaaaccgcacattctccagcactaccgcgagcggttcaccaatatcctggtggac
gaattccaggataccaacaacattcagtacgcctgggtgcgcctgctggcgggcgatacc
ggtaaggtgatgatcgtcggcgatgacgatcagtcgatctacggctggcgcggcgcgcag
gtggaaaacatccagcgcttcctcaacgacttccccggcgcgcagaccattcgtctggaa
cagaactaccgttcgaccagcaatatcctcagcgcggccaacgccctgattgagaacaac
aacgggcgtctgggcaaaaaactgtggaccgacggcgtcgacggcgagccgatttcgctc
tactgcgcgtttaacgaactggacgaagcgcgctttgtggttaaccgcatcaagacctgg
caggacaacggcggggcgcttgagcagtgcgccatcctctatcgcagcaacgctcagtcg
cgcgtactggaagaggctttgctgcaggcgagtatgccgtaccggatctatggcggtatg
cgcttcttcgaacgccaggagattaaagacgcgctttcttatctgcgcctgatcgccaac
cgtaatgacgacgccgcctttgaacgcgtggtgaataccccgacccgcggaattggcgat
cggactctggacgtggtgcgccagacctcgcgcgatcgtcagcttacgctgtggcaggcc
tgtcgcgagctgttgcaggagaaagcgctggccggacgcgccgccagcgcgctgcaacgc
tttatggagcttatcgacgcgctggcgcaggaaaccgccgatatgccgctgcacgtacag
accgatcgggtcatcagagactccggcctgcgcaccatgtacgagcaggagaaaggcgag
aaggggcagacccgtattgaaaacttagaggaactggtgacggcgacgcgccagttcagc
tacaacgaagaagacgaagatttaatgccgttgcaggcgtttctctcgcacgcggcgctg
gaagcgggcgaagggcaggcggatacctggcaggatgcggtgcagttaatgaccctgcac
tcggcgaaagggctggagttcccgcaggtgtttatcgtcgggatggaagaggggatgttc
ccgagccagatgtcgctcgatgaaggcggtcgtctggaagaggagcgccgtctggcctac
gttggcgtcacccgcgcgatgcaaaaactcaccttaacttatgccgaaacgcgccgtctg
tacggcaaagaggtctatcatcgcccgtcgcgctttatcggcgagctgccggaagagtgt
gtggaggaagttcgcctgcgcgccacggtcagccgaccggtgagccatcagcggatgggc
acacccattgcggaaaacgataccggctacaagctgggccagcgcgtgcgtcatgcgaag
ttcggcgaaggcaccatcgtgaatctggaaggcagcggcgagcacagccgtttgcaggtc
gccttccaggggcaggggatcaaatggctggtcgctgcctacgcgaagctggaaacggtt
tga
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