Citrobacter rodentium: ROD_41831
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Entry
ROD_41831 CDS
T01145
Symbol
kdtA
Name
(GenBank) 3-deoxy-D-manno-octulosonic-acid transferase
KO
K02527
3-deoxy-D-manno-octulosonic-acid transferase [EC:
2.4.99.12
2.4.99.13
2.4.99.14
2.4.99.15
]
Organism
cro
Citrobacter rodentium
Pathway
cro00540
Lipopolysaccharide biosynthesis
cro01100
Metabolic pathways
Module
cro_M00060
KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type
Brite
KEGG Orthology (KO) [BR:
cro00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
ROD_41831 (kdtA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
cro01005
]
ROD_41831 (kdtA)
Enzymes [BR:
cro01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.99 Transferring other glycosyl groups
2.4.99.12 lipid IVA 3-deoxy-D-manno-octulosonic acid transferase
ROD_41831 (kdtA)
2.4.99.13 (Kdo)-lipid IVA 3-deoxy-D-manno-octulosonic acid transferase
ROD_41831 (kdtA)
2.4.99.14 (Kdo)2-lipid IVA (2-8) 3-deoxy-D-manno-octulosonic acid transferase
ROD_41831 (kdtA)
2.4.99.15 (Kdo)3-lipid IVA (2-4) 3-deoxy-D-manno-octulosonic acid transferase
ROD_41831 (kdtA)
Lipopolysaccharide biosynthesis proteins [BR:
cro01005
]
Lipid A
ROD_41831 (kdtA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glycos_transf_N
Glycos_transf_1
Glyco_trans_4_4
PCC_BT
Motif
Other DBs
NCBI-ProteinID:
CBG90881
UniProt:
D2TIW9
LinkDB
All DBs
Position
complement(4411043..4412320)
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AA seq
425 aa
AA seq
DB search
MLELLYTAILYLIQPLIWIRLWVRGRKAPAYRKRWGERYGFYRQPLKSGGIMLHSVSVGE
TLAAIPLVRALRHRYPDLPITVTTMTPTGSERVQSAFGSDVQHVYLPYDLPDALGRFLDR
VDPRLVLIMETELWPNLIAALHKRHIPLVIANARLSERSAKGYAKLGKFIRRILRRITLI
AAQNEEDGQRFVTLGAKNNQVTVTGSLKFDISVTPQLAAKAVTLRRQWAPHRPVWIATST
HDGEESIVIAAHQALLHQFPNLLLILVPRHPERFPDAINLVREAGLSYTTRSSGEVPSAT
TQVVVGDTMGELMLLYGIADLAFVGGSLVERGGHNPLEAAAHAIPVLMGPHTFNFKDICA
RLEQASGLITVTDAPSLVKEVSSLLTDADYRNFYGRHAVEVLYQNQGALQRLLQLLEPYL
PPKTH
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaattgctttacaccgccattctttaccttatacagccactaatctggatacgg
ctgtgggtgcgcggacgtaaggccccggcctaccgtaaacgctggggtgaacgctacggt
ttctaccgccagcctctgaaatccggcggaattatgctccattccgtctcggtaggtgaa
acgctggcggcaataccattagtgcgcgcgttgcggcatcgctatcccgatctgccgatt
accgtcaccaccatgacaccgacgggttccgagcgcgtccagtctgccttcggcagcgat
gtacagcacgtctatcttccctatgatctgcccgacgcgctgggtcgctttctcgacaga
gtcgatccccgcctggtgctgattatggaaacagagctttggccaaacctgatcgccgct
ctgcacaagcgccacatcccgctggtcattgccaacgctcgcctttccgaacgctctgct
aagggctacgcgaagctggggaaatttattcgccgcatccttcgccgtattacgctcatt
gctgcgcaaaatgaagaagatggtcagcgctttgtgacgctgggcgcgaagaataaccag
gtgaccgttaccggcagccttaagttcgatatttccgttacgccgcagctcgcggcgaaa
gcggtaacgctgcgccgtcagtgggcgccccatcgtccggtatggatcgccaccagcacc
cacgatggcgaagaaagcattgttatcgccgctcatcaggcgttgttacaccagtttccc
aacctgctgctgatccttgttccccgccatccggaacgtttcccggatgcgataaacctc
gtacgcgaagccggtcttagctataccacccgttcttccggagaggtgccctcagccact
acgcaggttgtcgtcggcgatacgatgggtgaactgatgctgctttacggcattgcggat
ctggcgtttgtcggaggctcgctggttgaacgcggcgggcataacccgctggaagccgcc
gcgcacgctattccggtgttaatggggccgcatacctttaactttaaggacatctgcgct
cgtctggagcaggccagcggtctgattacggtgacagacgcccccagcctcgttaaagag
gtttcctctttactgaccgatgccgattatcgtaatttttatggtcgtcacgcagttgaa
gtgctgtaccagaaccagggcgcgctccagcgcttgctgcagctgctggaaccttatctg
ccaccgaaaacgcactga
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