Citrobacter rodentium: ROD_45641
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Entry
ROD_45641 CDS
T01145
Name
(GenBank) putative signal transduction protein
KO
K18765
RNase E specificity factor CsrD
Organism
cro
Citrobacter rodentium
Brite
KEGG Orthology (KO) [BR:
cro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cro03019
]
ROD_45641
Messenger RNA biogenesis [BR:
cro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ROD_45641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Motif
Other DBs
NCBI-ProteinID:
CBG91260
UniProt:
D2TND0
LinkDB
All DBs
Position
4809659..4811599
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AA seq
646 aa
AA seq
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MRLTTKFSAFVTLLTGLTIFVTLIGCSLSFYNAIQYKMSHRVQAVATAIDTHLVSRDFHR
LAVQINELMMSADIVRLDLRQGSKSIYTQTRNGSYRPMGASDMYRELSVPLMKQPGMTMR
LVYQDPMGHYFHSTMTTAPLTVAIGFIIIMLFLAVRWLQRQLAGQELLEMRSTRILNGER
GSGVRGTVYEWPARTSSALDMLLSEIQNAQEQRSRLDTLIRSYAAQDTKTGLNNRLFFDN
QLATLLDDQEKVGAHGVVMMIRLPDFNLLRDSWGRNLAEEELFSLINLLSTFIMRFPGAL
LARYHRSDFAVLLPHRTLKEAESVAGQLLKAVDALPSNKMLDRDDMFHIGICAWRSGQST
EQVMEHAEAATRNAVLQGGNSWAVYDDTLPEKGRGNVRWRTLIEQMLRRGGPRIYQKPAV
TREGRVHHRELMCRIFDGNEEVSSAEYMPMVLQFGLSEEYDRQQIGRVIPLLGYWPEENL
AIQVTVESLIRPRFQRWLRDTLMQCEKSQRKRIIIELAEADVGQHISRLQPVIRLVNALG
VRVAVTQAGLTLVSTSWIKELNVELLKLHPGLVRNIEKRTENQLLVQSLVEACSGTHTQV
YATGVRSRGEWQTLTARGVSGGQGDFFASSQPLDTNVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgacgaaattctcagcttttgtaacgctactgaccgggttaaccatcttc
gtgacccttatcggttgctcgctgagtttttacaacgctattcagtacaaaatgagccat
cgcgtgcaggcggtggcgaccgccatcgatacgcatcttgtttcgcgcgatttccaccgc
ctggcggtacaaattaacgagctgatgatgtctgcggatatcgtgcgtctcgatctgcgc
cagggcagcaagtcaatctatacccagacgcgcaacggcagctaccgcccgatgggcgca
agcgatatgtaccgcgagctgtcggttcctctgatgaagcagccgggaatgacgatgcgc
ctggtttaccaggatccgatgggccactattttcattcgactatgaccaccgcgccgctc
acggtggcgatcggcttcattattattatgctgtttctggcggtgcgctggctccagcga
cagcttgccgggcaggaactgctggagatgcgttcgacgcgcatactgaacggcgaacgc
gggtcgggcgtgcggggaaccgtctacgaatggccggcgcgcaccagcagcgcgctggac
atgctgctctctgaaatccagaatgcgcaggagcagcgtagccgactcgacacgctgatt
cgttcttacgcggcccaggacaccaaaaccggcctgaacaaccggctcttttttgacaac
caactggcgacgctgctcgacgatcaggaaaaggtcggcgcgcacggcgtggtgatgatg
attcgcctgccggactttaacctgctgcgcgacagctggggacgtaacctcgccgaagaa
gaacttttcagccttattaatctgctctccacctttattatgcgtttcccgggcgcgctg
ctggcgcgttaccaccgcagcgattttgccgttctgttgccgcatcgcacgctgaaagag
gcggaaagcgttgccggacagctgttaaaagcggtggacgcgctgccgtccaataagatg
ctcgaccgcgatgatatgtttcatatcggcatatgcgcctggcgtagcggacagtcgacc
gagcaggtgatggaacatgcggaagcggccacccgtaacgccgtattgcaggggggcaac
agctgggcggtgtacgatgacacgctgccggaaaaagggcgcggcaacgtgcgctggcgc
accctgattgaacagatgcttcgccgcggcgggccgcgcatttaccagaagcctgccgtc
acccgggaagggcgcgttcaccaccgcgagctgatgtgccgtatctttgacggcaatgag
gaggtcagctcggcggaatatatgccgatggtattgcagttcggcctgtcggaagagtat
gaccgccagcagatcggccgcgttatcccactgttaggctactggccggaagagaatctg
gccattcaggtgacggttgagtccctgattcgtccccgtttccagcgctggctgcgcgat
accttgatgcagtgtgaaaaatcgcaacgtaaacgcataattattgaacttgcagaggcg
gatgtgggtcaacacatcagccggctacagcctgttattcgtctggtcaatgcgctgggc
gttcgggtggcggtaacgcaggccggtttaacgctggtgagcaccagctggattaaagaa
ctcaatgtagaattgcttaagcttcatccggggctggtgaggaacattgagaagcgaacg
gagaaccagctgctggtgcaaagcctggtggaagcgtgctcgggcacgcatacccaggtg
tacgcgacgggggtccgatcgcgtggcgagtggcagacgctgacagcgcgcggcgtctct
ggcgggcagggagatttctttgcttcctcgcagccgctggatactaacgtgaaaaaatat
tctcaaagatactcggtttga
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