Citrobacter rodentium: ROD_46681
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Entry
ROD_46681 CDS
T01145
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cro
Citrobacter rodentium
Pathway
cro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ROD_46681 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cro03019
]
ROD_46681 (pnp)
03016 Transfer RNA biogenesis [BR:
cro03016
]
ROD_46681 (pnp)
Enzymes [BR:
cro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
ROD_46681 (pnp)
Messenger RNA biogenesis [BR:
cro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ROD_46681 (pnp)
Transfer RNA biogenesis [BR:
cro03016
]
Prokaryotic type
tRNA degradation factors
ROD_46681 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
OB_RRP5_4th
aRib
KH_2
S1_RRP5
KH-I_KHDC4-BBP
KH_SLS1_2
DUF5813
Motif
Other DBs
NCBI-ProteinID:
CBG91362
UniProt:
D2TQ10
LinkDB
All DBs
Position
4924972..4927176
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AA seq
734 aa
AA seq
DB search
MRRRSGLNGDSAWGRQKSVKEIILLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDD
TAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDR
PVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYI
NDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQ
AINDLVKEAGKPRWDWQPEAVNEALNARVAALAESRLSDAYRITDKQERYAQVDAIKSET
IDALLAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRT
HGSALFTRGETQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPK
RREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPI
KAAVAGIAMGLVKEGDNFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKE
IMQVALNQAKGARLHILGVMEQAINAPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIR
ALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGA
FVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQ
PAAAPEAPASEQGE
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagaagatcgggtcttaacggcgactcagcatggggtcgccagaaatcagtaaag
gaaattattttgttaaatccgatcgttcgtaaattccagtacggtcagcataccgttacg
ctggaaactggcatgatggctcgtcaggccactgccgctgttatggttagcatggatgac
actgcggtattcgttaccgttgttggtcagaaaaaggcgaaaccgggtcaggacttcttc
ccgctgaccgttaactatcaggagcgtacctacgctgctggtcgtattccgggaagcttc
ttccgtcgtgaaggccgcccgagcgaaggcgaaacgctgatcgcgcgtctgattgaccgc
ccggttcgcccgctgttcccggaaggctttgtcaacgaagtccaggttatcgcgaccgtg
gtttccgttaacccgcaggttaacccggatatcgttgcgatgatcggcgcctctgccgcg
ctgtccctgtccggcattccgttcaacggcccgatcggcgccgcgcgtgtcggttacatc
aacgaccagtacgtgctgaacccgactcaggatgaactgaaagagagcaagctggatctg
gttgttgccggtactgaagcggctgtgctgatggttgaatccgaagcggaactgctgagc
gaagaccagatgctgggcgcggtcgtgttcggtcacgaacagcagcaggtggttatccag
gcgatcaacgatctggtgaaagaagccggtaaaccacgttgggactggcagccggaagcg
gtcaacgaagcgctgaacgcgcgcgttgcagccctggccgaatctcgcctgagcgatgct
taccgcatcaccgacaagcaggagcgttacgcgcaggttgacgcgatcaaatcggaaacc
atcgacgcgctgctggcggaagacgaaacccttgacgctaacgaactgggtgaaattctg
cacgctatcgagaaaaacgtggtgcgtagccgcgtactggcaggcgagccgcgtatcgat
ggccgtgaaaaagatatgattcgtggtctggacgtgcgcaccggcgtgctgccgcgcacc
cacggttccgcgctgttcacccgtggcgaaacgcaggcgctggtgaccgcgaccctgggt
acagcccgtgacgcgcaggttcttgatgaactgatgggcgagcgtaccgacagcttcctg
ttccactacaacttccctccgtactccgtaggcgaaaccggcatggtcggttctccgaag
cgtcgtgaaatcggtcacggtcgtctggcgaagcgtggcgtgctggcggttatgccggat
atggataaattcccgtacaccgtgcgcgtcgtgtctgaaattaccgaatccaacggttct
tcttccatggcttccgtctgtggcgcatctctggcgctgatggacgcgggcgtgccgatc
aaagccgccgttgccggtatcgcaatgggtctggtgaaagaaggcgacaactttgtcgtg
ctgtctgacatcctgggcgacgaagatcacctgggcgatatggacttcaaagtggcgggt
tcccgcgacggtatctctgcgctgcagatggatatcaaaattgaaggtatcaccaaagag
atcatgcaggttgcgctgaaccaggcgaaaggcgcgcgtctgcacattctgggcgtgatg
gaacaggccatcaacgcgccgcgcggcgatatttctcagttcgctccgcgtatccacacc
atcaagatcaacccggacaagatcaaagacgtgatcggtaagggcggttctgtgattcgc
gcgttgaccgaagaaaccggcaccactatcgaaatcgaagacgacggtaccgtgaagatc
gctgcgaccgacggagagaaagcgaaacacgctatccgtcgcatcgaagagatcaccgcg
gaaatcgaagtgggtcgtatctacaatggtaaagtgacccgtatcgttgactttggcgca
tttgttgccatcggcggcggtaaagaaggtctggttcatatttctcagattgccgacaaa
cgcgtcgagaaagtgaccgattacctgcagatgggccaggaagtaccggtgaaagttctg
gaagttgaccgccagggccgcgtacgtctgagcattaaagaagcaactgagcagtcccag
ccagctgctgcgccggaagcgccggccagcgaacagggcgagtaa
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