Citrobacter rodentium: ROD_46701
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Entry
ROD_46701 CDS
T01145
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase (DEAD-box protein)
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cro
Citrobacter rodentium
Pathway
cro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ROD_46701 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cro03019
]
ROD_46701 (deaD)
03009 Ribosome biogenesis [BR:
cro03009
]
ROD_46701 (deaD)
Enzymes [BR:
cro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ROD_46701 (deaD)
Messenger RNA biogenesis [BR:
cro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ROD_46701 (deaD)
Ribosome biogenesis [BR:
cro03009
]
Prokaryotic type
rRNA helicases
ROD_46701 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
CBG91364
UniProt:
D2TQ12
LinkDB
All DBs
Position
4928349..4930229
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AA seq
626 aa
AA seq
DB search
MAEFETTFADLGLKAPVLEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF
SLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAQIQPTAEGEELD
LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER
RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE
VLQHFTRTRILNKPMNMQLVGDAQPHTERRGGGRSFGGERREGGRGFGGERREGGRGDGR
RFSGERREGRAPRREEGSSRRRFGDA
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctggggcttaaggctcctgtccttgaagcc
cttaacgatctgggttacgaaaaaccatctccaatccaggcagagtgcattccgcatctg
ctgggcggtcgcgacgttctgggtatggcccagaccggtagcggcaaaaccgcagcgttc
tcattaccgctgctcaacaatcttgatcctgagctgaaggcacctcagattctggtgctg
gcgccgacccgcgaactggcggttcaggttgccgaagccatgacggatttctctaaacat
atgcgcggcgtaaacgtggttgccctgtacggcggccagcgttatgacgtgcagttacgc
gccctgcgtcaggggccgcagatcgtcgtcggtacgccgggacgtctgctcgatcactta
aaacgcggtacgcttgatctctctaaactgagcggtctggtgctggacgaagccgatgaa
atgctgcgtatgggcttcattgaagacgtcgaaaccatcatggcgcagatcccggaaggt
catcagaccgcgctgttctctgccaccatgccggaagcgattcgtcgcattacccgtcgc
tttatgaaagagccgcaggaagtgcgtattcagtccagcgtgaccacccgtccggacatc
agccagagttactggaccgtctggggcatgcgtaaaaacgaagcgctggtgcgtttcctg
gaagcggaagattttgatgcggcgattatcttcgttcgtaccaaaaacgcgaccctggaa
gtcgcggaagcgctggagcgtagcggctataacagcgccgcgctgaacggcgacatgaac
caggcgctgcgtgagcagactctggagcgcctgaaagacggtcgtctggatatcctgatt
gcgactgacgttgcggcccgtggtctggacgttgagcgtatcagcctggtcgttaactac
gatatcccgatggattctgagtcttacgttcaccgtatcggccgtaccggtcgtgcgggc
cgtgcgggccgtgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatc
gaacgcaccatgaagctgaccattccggaagtcgaactgccgaacgcagaactgctgggc
aaacgccgtctggaaaaattcgccgcgaaagtacagcagcagctggaaagcagcgatctc
gatcagtatcgtgcgctgctggcgcagattcagcctaccgctgaaggcgaagagctggat
ctggaaacgctggccgccgcgctgctgaagatggcgcagggtgaacgtaccctgatcgtt
ccgccggatgcgccgatgcgtcctaagcgtgagttccgtgaccgtgatgaccgtggtccg
cgcgatcgtaacgatcgtggcccgcgtggcgaccgtgaagatcgtccgcgtcgcgaacgt
cgtgacgttggcgatatgcagctgtaccgcattgaagtgggccgtgacgacggtgttgaa
gtgcgtcatatcgttggcgcgatcgctaacgaaggcgatatcagcagccgttacattggc
aacatcaagctgtttgcctctcactccaccatcgagctgccgaaaggtatgccgggtgaa
gtgctgcaacactttacgcgtacccgcattctgaacaagccgatgaacatgcaactggta
ggcgatgcgcagccgcataccgagcgtcgtggcggtggtcgtagcttcggtggcgaacgt
cgtgaaggcggtcgcggcttcggcggtgagcgtcgtgaaggtggtcgtggtgatggtcgt
cgtttcagcggcgagcgtcgcgaaggtcgcgctccacgtcgtgaagagggttccagccgt
cgtcgtttcggcgacgcgtaa
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