Citrobacter rodentium: ROD_49411
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Entry
ROD_49411 CDS
T01145
Symbol
recJ
Name
(GenBank) single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cro
Citrobacter rodentium
Pathway
cro03410
Base excision repair
cro03430
Mismatch repair
cro03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ROD_49411 (recJ)
03430 Mismatch repair
ROD_49411 (recJ)
03440 Homologous recombination
ROD_49411 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cro03400
]
ROD_49411 (recJ)
DNA repair and recombination proteins [BR:
cro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
ROD_49411 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
ROD_49411 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ROD_49411 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
PEP-utilizers
Motif
Other DBs
NCBI-ProteinID:
CBG91622
UniProt:
D2TSQ8
LinkDB
All DBs
Position
5201097..5202830
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AA seq
577 aa
AA seq
DB search
MKKEIQLRRREVDETADLPADLPPLLRRLYASRGVRSARDLERSVKGMLPWQQLSGVDKA
VDILYNAFREGTRIIVVGDFDADGATSTALSVLGMRALGCNNVGYLVPNRFEDGYGLSPE
VVDQAHARGAQLIVTVDNGISSHAGVDHASALGIPVVVTDHHLPGDTLPAAQAIINPNLR
DCDFPSKSLAGVGVAFYLMLALRTYLRDKGWFDERGIAPPNLAELLDLVALGTVADVVPL
DANNRILTWQGLSRIRAGKCRPGIKALLEVSNRDPQKLAASDLGFALGPRLNAAGRLDDM
SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQAEALTLCEKLERSRDALPGGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP
GLMIKFGGHAMAAGLSLEEAKFDLFQQRFGELVTDWLDPSLLQGEIISDGPLSAAEMTME
VAQLLRDAGPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTT
CWPDNGVREVELAYKLDINEFRGNRSLQIIIDNIWPI
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaaagagatacagcttcgtcgacgagaggtcgatgagacggcagatctgcctgcc
gatctcccgccattactgcgccgcctgtatgccagtcgcggcgtgcgtagcgcccgcgat
ctggagcgcagcgtaaaagggatgctgccctggcagcagctgagcggcgtcgataaggcg
gttgatattctttataacgcctttcgcgaggggacgcgcatcatcgtggtcggcgacttt
gatgccgatggcgccaccagtaccgcgctgagcgtgctggggatgcgcgcgctgggctgc
aataacgtcggctatctggtgcctaaccgctttgaggatggctacggcctgagtccggaa
gtggttgaccaggcgcacgcccgcggcgcgcagctgattgtgaccgttgataacggcatc
tcttcccacgcgggggtcgatcacgccagcgcgctggggatcccggtggtggtgaccgat
caccacttgccgggcgacacgctgcccgcggcgcaggcgattattaacccgaacctgcgc
gactgcgatttcccgtcaaagtcgctggcgggcgtgggcgtggcgttttatctgatgctc
gctttgcgtacctacctgcgcgacaaaggctggtttgacgagcgcggcattgcgccgccg
aatctggcggaactgctggatctggtggcgcttggcaccgtggcggatgtggtgccgctg
gatgccaataaccgcattcttacctggcaaggcttaagccgtatccgcgccggaaagtgc
cgtccggggatcaaggcgctgctggaggtgtctaatcgcgatccgcagaaattggccgcc
agcgacttaggctttgcgctcggcccgcgtctgaatgccgcaggtcgcttggacgatatg
tccgtcggcgtggcgctgctgttatgtgacaacatcggcgaagcgcgggtgctggccaac
gagctggacgcgctgaaccagacgcgtaaagagattgagcaggggatgcaggcggaagcg
ctgaccctgtgcgagaagctggagcgtagtcgcgacgcattgcccggcggtctggcgatg
tatcatccggagtggcatcagggcgtcgtcggcattctggcgtcacgcattaaagagcgt
ttccaccgtccggtgattgcctttgcgcctgcgggcgacggtacgttgaaaggttccgga
cgttcgattcaggggctgcatatgcgcgatgcgctggagcggctggatacgctgtatccg
gggctgatgattaagttcggcggtcatgcgatggcggcgggactgtcgctggaagaggcg
aagtttgacctgtttcagcagcgctttggcgagctggtcactgactggctggacccctcg
ttgttacagggagaaatcatttccgacggcccgctcagcgcggcagagatgacgatggag
gtggcccaactgctgcgcgacgcgggtccctggggacagatgttcccggagccgctgttt
gacgggcgttttcgtctgctccagcagcgtctggtcggcgaacggcacctgaaggtaatg
gtcgaaccggtcggcggcggcccgctgctggacggcatcgcgtttaacgtcgataccacc
tgctggccggataacggcgtgcgcgaagtggaactggcctataagctggatataaacgag
tttcgcggcaaccgcagtttgcaaattatcatcgacaatatctggccaatttag
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