Carex rostrata (bottle sedge): 144547149
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Entry
144547149 CDS
T11623
Symbol
UAP56A
Name
(RefSeq) DEAD/DEAH box RNA helicase family protein isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
crot Carex rostrata (bottle sedge)
Pathway
crot03013
Nucleocytoplasmic transport
crot03015
mRNA surveillance pathway
crot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
144547149 (UAP56A)
09122 Translation
03013 Nucleocytoplasmic transport
144547149 (UAP56A)
03015 mRNA surveillance pathway
144547149 (UAP56A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crot03019
]
144547149 (UAP56A)
03041 Spliceosome [BR:
crot03041
]
144547149 (UAP56A)
Enzymes [BR:
crot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
144547149 (UAP56A)
Messenger RNA biogenesis [BR:
crot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
144547149 (UAP56A)
Spliceosome [BR:
crot03041
]
Complex C
Other components
EJC/TREX
144547149 (UAP56A)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
144547149 (UAP56A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
144547149
NCBI-ProteinID:
XP_078151867
LinkDB
All DBs
Position
31:complement(4319816..4324159)
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AA seq
344 aa
AA seq
DB search
MDVICQAKSGMGKTAVFVLATLQQIEPVAGQVAALVLCHTRELAYQICHEFERFTTYLPD
IKVAVFYGGVHISKHKDILKNECPHIVVGTPGRILALSREKDLSLKNVRHFILDECDKML
ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKRFMQDPMEIYVDDEAKLTLHGL
VQHYIKLSEQEKNRKLNDLLDALDFNQVVIFVKSVTRAAELNKLLCECNFPSICIHSGMA
QEERLMKYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG
TKGLAITFVASASDSDILNQVQERFEVDIKELPEQIDTSTYMPS
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atggacgtaatctgccaagccaagtctggtatgggaaagactgctgtctttgtcctcgcg
acccttcaacaaatcgagcctgttgctggccaagtcgctgcccttgttctctgccacacc
cgcgagttggcttatcagatctgccacgagtttgagagattcacgacatacttgcctgac
atcaaggtggcggtgttctatggtggagtgcacatatccaagcataaggatatactgaag
aatgagtgccctcatattgtggttggcactcctggaagaatccttgctctctcccgtgaa
aaggatctctccctaaagaacgtgcgccatttcattcttgatgagtgtgataagatgctc
gagtctcttgacatgaggagggatgtacaggagatattcaagatgactcctcatgataag
caagtcatgatgttttcagccacactcagcaaggagatccgccctgtttgcaaacgtttt
atgcaagatccgatggaaatctatgttgatgatgaagccaagcttaccttgcatggtctt
gttcagcactacataaaactttcagaacaggagaagaacaggaagttgaatgatctcttg
gatgcattggacttcaaccaggtggtgatatttgtaaagagcgtcactcgggctgctgag
ctcaacaagctgctttgcgagtgcaacttcccctccatttgcattcactccggaatggca
caggaggaaagattgatgaagtacaagagcttcaaggaagggcacaagaggatactggtt
gcaaccgacttggtgggcaggggcattgacatcgagcgtgtcaacattgtaattaattat
gacatgcctgactctgctgacacctatctccacagggttggcagggctggccgttttgga
accaagggtcttgcaattacatttgtagcttctgcttcggattctgatattcttaaccag
gttcaagagaggtttgaggttgatattaaagaactgccagaacaaatcgacacctctaca
tacatgccatcttaa
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