Carex rostrata (bottle sedge): 144555350
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Entry
144555350 CDS
T11623
Name
(RefSeq) putative chromatin-remodeling complex ATPase chain
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
crot Carex rostrata (bottle sedge)
Pathway
crot03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
crot00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
144555350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crot03021
]
144555350
03036 Chromosome and associated proteins [BR:
crot03036
]
144555350
Transcription machinery [BR:
crot03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
144555350
Chromosome and associated proteins [BR:
crot03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
144555350
RSF complex
144555350
WICH complex
144555350
B-WICH complex
144555350
NORC complex
144555350
BRF complex
144555350
NuRF complex (fruit fly)
144555350
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
Helicase_C
ResIII
HAND
DEAD
HDA2-3
Myb_DNA-binding
SWI2_SNF2
DBINO
AAA_14
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
144555350
NCBI-ProteinID:
XP_078159772
LinkDB
All DBs
Position
6:complement(2267879..2278746)
Genome browser
AA seq
1083 aa
AA seq
DB search
MAKRKGTPVSASFSEGEEEYTPSNSDTDEEGEGGNIGAEGEDEEEIEAVARNASIDEVEN
DEESTDSDGDRMKIDDEYDDDDSEGEDPFPSGVVGKREKARLRELQRQKKQKIEKILDSQ
NALIDADMNNKGKGRLKYLLEQTEIFAHFAKGAQSASEKKPRGRGRHASKLTEEEEDEEY
LKEEEDEFSAAGTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQ
TISLLGYLHEFRGIIGPHLVVAPKSTLGNWMKEIRRFCPVLRAVKFLGNPDERKHIREDL
LVAGKFDVCVTSFEMVIKEKNALKRFSWRYVIIDEAHRIKNENSLLSKTMRLYKTNYRLL
ITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVIQQLHKVLRPFLLR
RLKSDVEKGLPPKKETILKVGMSQMQKHYYKALLQKDLEVINAGGERKRLLNIAMQLRKC
CNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILE
DYLMFRGYRYCRIDGNTGGEERDAYIESFNRPDSDKFVFLLSTRAGGLGINLATADVVIL
YDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGR
LAEQKAVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEETTAELDAKMKKFTED
AIKFKMDDTAELYDFDDDKDDNKTDFKKLVADNWIEPPKRERKRNYSDVDYYKQALRQGG
PSRQREPRIPRMPQLHDFQFFDMKRLNQLYEKEVRYQIIHQMNERKDLIGDGDDEDFGEP
LSAQEQEEKERLLQEGFSTWTKRDFNTFVRACEKYGRNDIKNIASEMEGKAEEEVYRYAK
VFKERYKELNDYDRIIKNIEKGEARISRKEEIMQAIAKKMSRYQNPWHELKIQYGQNKGK
LYNEECDRFMLCMVNEIGYGNWDELKEEFRNNHLFRFDWFVQSRTAHELGKRCDTLIRLV
EKENQEYDERDRFSKDKNVTKNLTPPRRSITRSPALDTPNSGSFRRRRPVLDDYPTTARK
RQL
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaaggaaaggaaccccagtctcggcttctttttctgagggtgaagaggaatat
accccctcaaactctgacacggacgaggaaggagagggaggaaatattggtgctgaagga
gaagacgaggaagaaattgaggcggttgctcgaaatgcgagcatcgatgaggtggaaaac
gatgaagagtcgaccgacagtgatggcgaccgaatgaaaatagatgatgaatacgacgat
gatgattccgagggtgaagatcctttcccaagtggtgtggtgggaaagcgtgaaaaagca
aggttacgagaactgcaaagacagaaaaagcaaaaaatcgaaaagatattggattctcaa
aatgctttaattgatgcagatatgaataacaaaggaaaaggtcggttgaagtacctactc
gagcagaccgagatatttgcacactttgccaaaggtgcacaatctgcatctgaaaagaag
cctagaggaaggggtcgacatgcttcgaaattgactgaagaagaagaagatgaggagtac
cttaaggaggaggaggatgagttttctgctgctggtactcgattagtcacacagccatct
tgtattcaggggaaaatgagggactatcaacttgcgggtctaaattggcttatccggttg
tatgagaacggaataaatgggattttagctgatgaaatgggtctcgggaaaaccttgcag
acgatctctttgcttggttatttgcatgaattcagaggtattatagggccccacctggtt
gtggcaccgaagtctactcttggtaactggatgaaagagatacgacggttctgtcctgtt
ctacgagctgtaaaatttcttggaaacccagatgaaaggaaacatatacgggaagatcta
ttagttgcggggaagtttgatgtctgtgtgactagttttgaaatggtcatcaaagagaag
aatgcattgaagcgttttagctggagatatgtcattattgatgaggcccataggataaag
aatgaaaattctttactctctaaaacaatgagactttacaagaccaactaccgccttctc
attactggcactcctctacagaataatctccacgagctgtgggctcttctcaattttctt
cttcctgaaatattcagctcggctgaaacctttgacgagtggtttcagatatctggagaa
aatgaccaacaagaagtcattcaacagcttcacaaggttcttcgtccttttcttcttcga
aggctcaaatcagatgttgaaaagggtctacccccgaagaaggagacgattctcaaagtt
ggcatgtcacagatgcaaaagcactactataaagctttgcttcagaaggatctagaagta
ataaatgctgggggagaaaggaaacggctactaaacatagcaatgcagttgcgcaaatgc
tgtaaccatccatatctcttccagggtgccgagccaggtccaccgtatacaactggagat
catctcatcacaaatgccggaaaaatggtccttcttgataaattacttcccaaattgaag
gagcgagattccagagtcctcatattttctcagatgactagactcctggacatattagag
gactacttgatgtttcgtggctatcgttactgtcgcattgatggcaacacaggtggggaa
gaacgtgatgcttatattgaatccttcaaccggccagacagcgacaagtttgtgtttcta
ctgtcaactcgagcaggtggtctcgggattaaccttgccactgcagatgtggttattctc
tatgacagtgattggaatccacaagttgatttgcaagcgcaagacagggctcacaggatt
ggtcagaaaaaggaagtgcaagttttccgtttttgtacagagtataccattgaagaaaaa
gttattgaaagggcatacaagaaacttgcacttgatgctctggttatccaacaaggacgg
ttagcagaacagaaagctgtcaacaaggatgaactgttacaaatggtgaggtttggtgct
gaaatggtgttcagctccaaggacagcacaataactgatgaggacattgatcgaataata
gccaaaggagaggagacaacggccgagctcgatgcgaaaatgaagaaatttacggaggat
gccatcaagtttaagatggatgacactgctgagttgtatgactttgacgatgacaaggat
gataataaaactgacttcaagaagcttgttgctgataattggattgaaccaccgaagagg
gaaagaaaacgcaattactcagacgtggattattacaagcaagcattgcgtcaaggcggt
ccttctagacaaagagagcctcggatccctcgcatgcctcagctgcatgattttcagttc
tttgacatgaagaggttaaaccaattatatgagaaagaagtgcgttatcagataattcat
cagatgaatgaaaggaaagatctcattggtgatggtgatgatgaagactttggcgaacca
ttgagtgcccaagaacaagaggagaaggagcgtttgctacaagagggcttctcaacatgg
acaaagagggatttcaatacatttgttcgagcctgtgaaaagtatgggagaaatgacata
aaaaatatagcttctgaaatggaggggaaggcagaggaggaggtatacagatacgccaag
gtcttcaaagaaagatacaaagaattaaatgattatgatcgaataattaaaaatattgag
aaaggcgaagcaaggatttctcgtaaagaggagataatgcaagcaatagcaaaaaaaatg
tctcgttatcagaacccgtggcatgagcttaaaatacaatatggccagaacaaagggaaa
ctatacaatgaagaatgcgatcgctttatgttatgcatggtcaatgaaatcggttatggc
aattgggacgagctgaaggaggagttccgtaacaaccacttgtttcgttttgactggttc
gtgcagtcacgcacagcccatgagctgggcaagcgctgcgacactctcattcgtctggtt
gagaaggagaatcaggagtatgacgagcgtgaccgtttctccaaggacaagaatgtcact
aagaatttgaccccacctagaaggtcaataaccagatcgcctgctctggatactccaaat
tcgggttccttcagaagaagaagacctgttttggatgattacccaacaacagctagaaag
cggcaactgtaa
DBGET
integrated database retrieval system
