Carex rostrata (bottle sedge): 144556165
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Entry
144556165 CDS
T11623
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
crot
Carex rostrata (bottle sedge)
Pathway
crot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
144556165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crot03041
]
144556165
Enzymes [BR:
crot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
144556165
Spliceosome [BR:
crot03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
144556165
Complex B
144556165
Complex C
U2 SnRNP specific factors
144556165
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Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Cas3-like_C_2
DUF3006
Motif
Other DBs
NCBI-GeneID:
144556165
NCBI-ProteinID:
XP_078160789
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All DBs
Position
6:5583111..5587336
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AA seq
758 aa
AA seq
DB search
MSKRKFGFEGFGLNRQARHNFDRPEAPQRLYMPSSDDNHEDPDIDNIEYDQQEGAESHNA
SSAADDGEIDPLDAFMEGIQDEISKAPAPAPSNQKVDKYIEDEEDDPMESFLHSKKDAGL
ALAADALNAGYGSDEEVYAAAKAVDAGMVEYDSDDNPIVVDKRKIEPIPSLDHSVIDYEP
FNKDFYDEKPSISGMSEQDVADYRRILAIRVSGFDVPKPIKLFEDCGFGAPLMSTISKQG
YEKPTPIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELAKEEGPIGVIC
APTRELAHQIYLEAKKFSKPYNIKVSAVYGGASKHEQFKELKAGCEIVVATPGRLIDLLK
MKAVKMLRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPYKVERLAREI
LSDPIRVAVGEVGMANEDIKQLVHVIPSDAEKTPWLLENLPRLIDEGDVLVFASKKATVD
EIETQLGQKGFRVAALHGDKDQASRTETLKKFKAGTYHVLVATDVAARGLDIKSIKSVVN
FDIARDMDTHVHRVGRTGRAGDKDGTAYTLITLKESRFAGDLVGSLIAAGQDVSIELMDL
AMKDSRFRSKRDSRKGNKKGGRGKGGAGGRGVRGVDFGLGIGYNPEGPSSAAPSQSSANR
SSVTNSLKKGMAQQFRSSFVSASANSQGNYAGVVPVARPTMRGFVSGGTIGGDSYRAQPV
VTNVPSSTVDPSSQHGNRSNDSSRERTRERKRPSGWDR
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagcgaaaatttggtttcgagggtttcgggttaaaccgacaggcgaggcacaac
ttcgaccggccggaggcgccgcagcgcctctacatgccttcctctgacgacaatcacgag
gatcctgacatagataacatcgagtacgaccagcaagagggagccgaatcgcacaacgcc
tcgtcagctgctgacgatggcgagatcgacccgcttgatgctttcatggagggaattcag
gacgaaatcagtaaagctcccgctccagccccttctaatcaaaaggttgacaagtacata
gaggatgaagaagatgatccaatggagagttttctgcattcaaagaaggatgcagggtta
gcattggcagctgatgcattgaatgctgggtacggatctgatgaggaggtgtatgctgca
gccaaagctgtggatgctggcatggttgagtatgattctgatgataaccctattgtggtg
gataagagaaaaatcgagccaattccatctttggaccatagtgtaatcgattatgagcca
tttaataaggacttttatgatgagaagccctctatttcgggaatgagtgagcaggatgtg
gcagattacagaagaatcctagccatacgggtttcgggctttgatgtacccaaaccgata
aagctctttgaagattgtgggtttggggctcccttaatgagtaccatctctaaacaagga
tatgaaaaaccaacaccaatacaatgccaggcactacctgttgtgctgtctggcagggat
ataatcggcattgcaaaaaccgggtctggtaagactgcagcctttgtactgcctatgata
gtacacatcatggaccaacctgaattagcgaaagaagagggccccattggtgtaatttgt
gctccaacaagagaattggcacatcaaatttatctagaagccaagaaattttcaaaacct
tacaacattaaggtatcggctgtgtatggtggtgcttctaagcatgaacagtttaaagag
cttaaagctggttgtgaaatagtagttgctactccagggaggttaattgatcttttgaag
atgaaggctgtgaagatgttaagggcgacttatttagtgcttgacgaggctgatcgcatg
tttgatctagggtttgaaccacaggtccgttcaattgtgggccagatcagacctgatcgt
cagactttgttattttcagccactatgccatataaagtcgagaggttggccagagagata
ttatctgacccaattagggttgcagtgggtgaggttggtatggcgaacgaggatattaaa
caactggtgcatgtaatcccttctgatgctgaaaagacgccttggttacttgaaaatcta
ccccgactgatagatgaaggggatgttcttgtgtttgcatccaaaaaggccaccgttgat
gagatagagacccaattgggccagaaagggtttcgggttgcagctcttcatggagataag
gatcaggcttctagaactgaaacattaaagaagttcaaggcaggcacataccatgtacta
gttgcaactgacgtggcagcacgtgggcttgatataaaatctatcaagtcggtagtgaac
ttcgacattgctagagatatggacacacatgtgcatagggttgggcgtactggccgtgct
ggggacaaggacggtacggcttacactctcattaccctgaaagagtcgagatttgcgggt
gatttggtcggtagtttaattgcggctgggcaagatgtctcgattgaattgatggatctt
gctatgaaggattcgaggttcagatcaaaaagagattctaggaaaggcaacaagaaaggt
ggcaggggaaaaggtggggcaggtggtcggggtgtgcgtggtgttgacttcggcctcggg
attggttacaaccctgaaggaccatcaagtgctgcaccatcccaatctagtgcaaaccga
tcttctgttacaaattcactgaagaaaggcatggcgcagcagtttcggagcagtttcgtc
tctgcttcagcgaattctcagggcaattatgctggggtggttcctgttgccaggccaaca
atgcgtgggtttgtttcgggcggtacaattggtggtgattcttatagagcacaaccagtg
gtgaccaacgtgccgtcgtctacagttgatccttcaagtcaacatggaaataggagtaat
gacagctcaagggaaagaacgagggagagaaaacgaccttctggatgggatcgctag
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