Carex rostrata (bottle sedge): 144559731
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Entry
144559731 CDS
T11623
Name
(RefSeq) cell division cycle protein 48-related / CDC48-like protein isoform X1
Organism
crot Carex rostrata (bottle sedge)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
Bromodomain
AAA_lid_3
IstB_IS21
nSTAND3
AAA_2
AAA_5
AAA_16
AAA_18
AAA_22
nSTAND_NTPase5
TIP49
AAA_14
AAA_30
NPHP3_N
AAA_25
RNA_helicase
AAA_7
AAA_33
ABC_tran
Mg_chelatase
PhoH
Parvo_NS1
MBD
DUF7877
AAA_19
RuvB_N
ResIII
Motif
Other DBs
NCBI-GeneID:
144559731
NCBI-ProteinID:
XP_078164970
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All DBs
Position
1:13801672..13811471
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AA seq
1216 aa
AA seq
DB search
MESKNGTSAPSTRTSARLRSKTTYYSKGFVYYQSPMRKKVKSKKRTAAAQIAKKILTPRK
SFSRNVPTDSNNLRRSTRKRKVSTNLEGYTDTSSSEDDDLMTPGYRPSKNKSVNNSNHSE
VSTYPSRKNKRLSNSNSAPRREGLRPRRAPGGRLLRHYGESEDEAQDDDNDDDDDEEEEE
EGEGDSNGENGNEEEEEEADGGDEAEEEEEEDDDEQEGRRRYDLRDRSEVRRSSPIKGEK
QRERAPHSPRRVLHHGMGLAGPRNGSANRCRYLKKGGPRMHKRPRFSLPDDSDDSLLVDE
IDGGPTVPWSRGTGRAGGAPLFFGGMEMQGGSTAWGLNMASSGWVHQGENSAVAACLTPG
VQTAGPSSKGGADIQPLQIDDNVGFNDIGGLAEYIDALKEMVFFPLLYPDFFANYHITPP
RGVLLCGPPGTGKTLIARALACSASKAGQKVTFYMRKGADVLSKWVGEAERQLKLLFEEA
QRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAI
DGALRRPGRFDREFHFPLPGYEARTEILDIHTRKWKDPPSDELKKELAASCVGYCGADLK
ALCTEAAIRAFREKYPQVYTSDDKFVIDVESVLVEKYHFLEAMSTITPAAHRGSVVQSRP
LSQVVGPCLKRHLEGVMERISDVFPFVNENVSKFSLLSFGSAIPLVYRPRLVICGDDSGG
LDHVGPAVLHELEKFPVHSVGLPSLLSDASAKTPEEALVHIFVEARRTTPSILYLPQFHL
WWETAHEQLKAVLLTLLDDLPSNLPVLLLGTSTVSFDQLDEDCASIFTSRNMYQVDKPSK
EDRSRFLDALFEAVVSLQKEESRSKVKDSKTLKELPKVAKEATGPKLSELKARAEAEQHA
LRRLRMCLRDVCNRILYDKKFQMFHYPVPEEEAPDYKTVISNPMDVATVLQRVDVGHYLT
CTAFMKDIELIAANAKAYNGTERPDAYRIVSRACELRDMVEGMLSQMDPALVSSCDKIAE
QGGPLHFEEDGDTGSILNSNPVAQLAVVTRASARLRNVQPEVNLSQSYEVLKRQKKSTEN
DQSGAAKDDKAPNTDHDLMRPDSLQADPAQEPNSNGPEKISPTIEVNATPDISSSSPPGD
ETKDTEMPDADFSEKMESAKQRFMEFTEGYGVPQLEILYTKVIRGLISARGKDAEQDSRQ
FIVRYLFRFVEEADKF
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atggagtccaagaatggtacgtcggcgccttccacacgtaccagtgccaggctacgatct
aaaacaacgtactatagcaagggctttgtatactaccaatcaccaatgaggaaaaaagtg
aagtcaaaaaagcgtactgcagctgctcaaattgcaaaaaagattctcactcctcggaag
tcttttagccgtaatgtacctactgattctaataacctgaggcgctcaactagaaaaagg
aaagtttcaactaatcttgaaggctatactgacacctctagctcggaggatgatgacctt
atgacccctgggtatcgcccttcaaaaaacaaatctgtaaacaattccaaccattctgag
gtgtcaacatacccgtctcgaaaaaacaagaggttgtcaaattccaatagcgcccctcgc
cgagagggcctacgccctcggcgggccccagggggaagactccttcgccattacggagaa
tccgaagacgaagcacaagatgacgacaatgatgatgatgatgatgaggaagaagaagaa
gaaggagaaggggacagcaatggggaaaacggaaatgaggaggaagaggaggaggcggat
ggaggggatgaagcggaggaggaggaagaggaggacgatgatgagcaagaggggaggagg
agatatgatttgcgggaccgctccgaggtgcgtaggtcatcacctatcaaaggggagaag
cagcgggagcgggcaccacattctccacgtagagttttgcaccatggcatgggacttgcg
ggtcccaggaatggcagtgccaaccgttgcaggtacctaaagaagggtgggccgcgcatg
cacaagcgcccgcgattttcacttccagatgattctgacgactctctcttggttgatgag
attgatgggggccccaccgtcccttggagtcgtggcacaggtcgtgccggtggtgcacct
ttattttttggtggtatggaaatgcagggggggtcaactgcatggggtttaaatatggcc
tcatcagggtgggtccaccagggtgagaacagtgctgtggctgcctgtctgacacctggg
gtccagactgcgggccccagctcgaaaggcggggctgatatccagcctctacaaatagat
gataatgttggctttaatgatataggtggcttggcagagtatatagatgctttaaaagag
atggtattctttcctttgttataccctgatttctttgcaaattaccatatcacccctcct
agaggagtattgttatgtggtccacctggcacgggaaagaccttaattgccagggcttta
gcatgctcggcctccaaggccggtcagaaggtgaccttttacatgcgaaagggggctgat
gtgttaagtaagtgggttggtgaggctgaaagacagttgaaacttttatttgaggaggca
caaagaaaccaaccatctattattttctttgatgaaattgatggattggcacctgttagg
tcaagcaaacaagaacagatccataattccatagtatctacccttcttgctttaatggat
ggcttggattcaagaggccaggttgtcttaattggtgccacaaatcgaattgatgcaatc
gatggagcccttcgccgacccggccggtttgatcgggaattccatttccctttaccaggt
tatgaagcacgaactgagatactggatatccatacccgcaaatggaaagacccaccttca
gacgagctcaaaaaagaactcgctgcgagttgtgtggggtattgtggggccgacctaaag
gcattgtgtactgaggcagcgattagggcttttagagagaagtacccacaagtttatacc
agtgatgataaatttgtgatagatgtggaatcagtactggtcgagaagtaccatttcttg
gaggcaatgtcgactatcaccccagcagcgcacaggggttcggttgtgcaatcaagacca
ctgtctcaggttgtgggcccctgcctcaagaggcatctagaaggggtcatggaacgtata
tccgatgtttttcctttcgttaatgagaatgtctcaaaattctcgctcctctcgtttggc
tcagcaatacctcttgtgtatagaccccgcctcgtgatttgtggcgacgattcgggcgga
ctggaccatgtcgggccagctgttctgcatgaactggagaagtttccagttcattctgta
ggactcccatctcttctttcggatgctagtgcaaagactcctgaagaagctctggtgcat
atttttgtagaagcaagaaggacaaccccctccattctgtacttgcctcagttccatctg
tggtgggaaactgcacatgagcaattgaaggctgtgttattgacacttttggacgaccta
ccatccaatctcccagtactgttgcttggaacctctactgtctcgttcgatcagttagat
gaggactgcgcatccattttcacttcacgtaatatgtatcaagtggacaagccgtccaag
gaggatagatctagattcttggatgcactgtttgaggcagtggtttccttgcaaaaggaa
gagtctagaagtaaggtcaaggactccaaaaccctaaaagaacttccaaaggtggcgaag
gaagcgactggacccaagctgtcagaactgaaagccagggctgaggctgagcagcatgcg
ttgcgtcgtctaaggatgtgcctcagagatgtttgcaacagaattttgtacgacaagaag
tttcaaatgttccactacccggttccagaggaggaggcaccggattacaaaacagttata
tcaaacccgatggatgtggcaactgtgctgcagcgggtcgacgtgggccactacctgacc
tgcaccgccttcatgaaggatatcgaactaatcgctgccaatgctaaggcctacaatgga
acagagcgtcctgatgcatatcgaattgtcagtagagcttgtgagcttcgtgatatggtg
gaaggcatgctttcgcagatggacccagcactggtctcctcctgtgacaagatagctgag
caagggggcccactgcactttgaggaagatggtgataccgggtcgattttgaattcaaac
ccggtagcacaactggctgttgtcacaagagcaagtgcacggcttcgcaatgtgcagcct
gaggttaacctatctcaaagctatgaggtattaaagcgtcaaaagaaaagcactgagaat
gaccaatcaggtgcagctaaagatgacaaagcacctaacaccgaccatgatctaatgagg
cccgattccttacaagcagatccagcccaagaacccaactcaaatgggcccgagaagatt
tctccaaccattgaggtaaatgcaacacctgacatcagttccagttccccgcctggggat
gaaactaaagataccgaaatgccggatgctgatttctcagaaaagatggaatcggcaaaa
cagcgttttatggaatttactgaagggtatggggtgcctcagttggagattctttataca
aaggtaataagaggcttgatttcggctagaggtaaagatgctgagcaagatagtaggcag
tttattgtgaggtatctcttcagatttgtcgaagaggctgacaaattttaa
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