Carex rostrata (bottle sedge): 144560426
Help
Entry
144560426 CDS
T11623
Name
(RefSeq) putative bifunctional riboflavin biosynthesis protein RIBA 2, chloroplastic isoform X1
KO
K14652
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:
4.1.99.12
3.5.4.25
]
Organism
crot Carex rostrata (bottle sedge)
Pathway
crot00740
Riboflavin metabolism
crot00790
Folate biosynthesis
crot01100
Metabolic pathways
crot01110
Biosynthesis of secondary metabolites
Module
crot_M00125
Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Brite
KEGG Orthology (KO) [BR:
crot00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00740 Riboflavin metabolism
144560426
00790 Folate biosynthesis
144560426
Enzymes [BR:
crot01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.4 In cyclic amidines
3.5.4.25 GTP cyclohydrolase II
144560426
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.12 3,4-dihydroxy-2-butanone-4-phosphate synthase
144560426
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHBP_synthase
GTP_cyclohydro2
Motif
Other DBs
NCBI-GeneID:
144560426
NCBI-ProteinID:
XP_078165748
LinkDB
All DBs
Position
10:complement(6957111..6962797)
Genome browser
AA seq
524 aa
AA seq
DB search
MATIASSSTVLNLNRNQVCIDKRHKLFKDLNLSQCSPSTRRVNAANTKLPRLVVSCSSAR
DGSAFVAKSTSLVGQDRQSDVFEKEAVQTVSTSPYDFSMDEDSEMDLDSPTAGFSSIPDA
IKDIQQGKLVIVVDDEARENEGDLIMAASLATPEAMAFIVRHSTGIVCVSMMGEDLEKLD
LPLMVSSKENEEKLCTAFTVTVDAKEGTSTGVSAKDRTKTVLALASADAKPGDFNRPGHI
FPLRYREGGVLKRAGHTEASVDLAVLAGLPPVGVLCEIVDESDGSMARLPKLREFAKREG
LKIVSIADLVRYRRKRDKLVERASIARLPLKWGNVNAYCYRSLLDGMEHIAMVKGDIGDG
QDILVRVHSECLTGDIFGSARCDCGSQLALAMEMIEKAGRGVLIYLRGHEGRGIGLGHKL
RAYNLQDNGRDTVEANEDLGLPVDSREYGIGAQMLRDLGVRSMRLMTNNPSKYLGLKGYG
LSVVGRVPLLTPITSENRRYMETKRIKMGHVYGAEFNGRLDNSA
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggctaccattgcttcttcttcaacagtgctcaatctcaatcggaatcaggtatgcatt
gacaaaaggcacaaattattcaaggatttgaatctgtcacaatgctctccatctacccgg
agggtcaacgcggctaacaccaagttgccgagactggtggtctcatgctcgtcagctaga
gatggcagtgcatttgttgcaaagagcacttctcttgtgggtcaggatcgtcagtccgat
gtttttgaaaaggaagctgtgcaaacagtttccacttctccttatgatttttcaatggat
gaagatagcgagatggatttggatagcccgactgcgggtttctcttctataccggatgcc
ataaaggatattcagcaaggcaagctggtcatagtagtggatgatgaggcaagagagaat
gagggagacctgatcatggcagcatctctggccactccagaggccatggcattcatagtg
cggcacagtaccggcattgtgtgtgtcagcatgatgggggaagatcttgaaaagttggat
cttcccctcatggtttcttctaaagagaatgaggagaaactttgcactgctttcactgtc
actgtggatgcaaaagaaggtacatcaactggtgtatcagcaaaagaccgcacaaaaacc
gtcctggcccttgcatcagcagacgccaagcctggagacttcaatcgtccgggacatata
ttccctcttaggtaccgggagggaggggttcttaaacgggccggacacactgaggcctca
gtggaccttgctgtgcttgccggccttccaccagtcggtgtcttgtgtgagatcgtcgat
gaaagtgacgggtccatggcacgcttaccgaagctgagggaatttgcaaagagggagggg
ctgaagattgtttccattgctgatttggttagatatagaaggaagagagacaaattggtc
gagagagcttccattgcacggttgccactcaagtggggcaatgtcaatgcctattgctac
cgctctcttcttgatggcatggaacatattgccatggttaagggagatatcggagatggc
caggatatactggtgcgggtccactccgagtgcttaacgggcgacatattcggatccgca
aggtgcgactgtggcagccagctggccttggcaatggagatgatagagaaggccggtaga
ggcgttttgatctacttgcgtggtcatgagggcaggggtattggtctcggccacaagctc
cgggcttacaatttgcaagataacggtagagatactgtcgaggccaacgaggatttaggc
cttccggttgattccagagagtatggcattggtgcacagatgttacgagaccttggggtt
cgttcaatgaggcttatgacgaacaacccgtctaaatacctgggtctaaagggctacggg
ctgagtgtagtggggcgggtcccgcttctgactccaattacctctgaaaacaggagatac
atggagacaaaaaggatcaagatgggccatgtttatggggccgagttcaatggccgtctc
gacaactcggcctaa
DBGET
integrated database retrieval system
