KEGG   Caenorhabditis remanei (nematode): GCK72_000385
Entry
GCK72_000385      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:crq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    GCK72_000385
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:crq03021]
    GCK72_000385
   03036 Chromosome and associated proteins [BR:crq03036]
    GCK72_000385
Transcription machinery [BR:crq03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     GCK72_000385
   Coactivators
    SAGA/TFTC/STAGA complex
     GCK72_000385
Chromosome and associated proteins [BR:crq03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     GCK72_000385
    STAGA complex
     GCK72_000385
    TFTC complex
     GCK72_000385
    SAGA complex
     GCK72_000385
    SLIK complex
     GCK72_000385
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 Beta-prop_WDR3_1st WD40 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_WDR90_POC16_2nd EIF3I WD40_Gbeta TFIID_NTD2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_CAF1B_HIR1 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR36-Utp21_1st WDR90_beta-prop_4th Beta-prop_IFT140_1st ANAPC4_WD40 Beta-prop_Aladin Beta-prop_RIG_2nd Beta-prop_WDR75_1st WD40_RFWD3 WD40_like RMC1_N Beta-prop_VPS8 KNTC1_N Beta-prop_IFT122_1st LisH Beta-prop_HPS5 Beta-prop_NWD2_C LisH_PAC1 PH_SPO71 Cytochrom_D1 Beta-prop_SCAP
Other DBs
NCBI-GeneID: 9797679
NCBI-ProteinID: XP_003091070
UniProt: A0A6A5HQP0 E3NKK2
LinkDB
Position
I:<2819229..>2831255
AA seq 647 aa
MNPQDNENSNSQFFDSPLMNQNNPMDDGLLSRPMNNETLQAVLEFLRKNGLSETEEQLTR
EAGPVLRNEGTSGLPPEEAISVEFDAFVKHANECSDVIQAEFSQLIFPIFAHSYIALMDK
HPDTARKFFNRFKIFIPECFSEFVHKLSLIEDQMTMRPNEYVRVLRENKVLVKLSKPTQK
HLESIQTRLIGVKNIIAKHINIESADEGAMSRTMIESQMGGILGVIGKGERRHKMLFSVV
KDELMQSIEKRKTKGKDVGKKMPTAQHCPQHDRIPLPPISEHLREERRNWLRDVGKMAII
TPETPVSICMYTTINAPVGVASCDFSDDSSFIAMGLSDSSIVINAMDPMNKMKKLRDMEF
LEKIDIETADNVHAQMFDLQGSQSSVRYTGHGGPVFSVNFSPDRRLLLSSSGDKTIRLWS
MDAQRNVVIYRCPAMVWQAQFCNRGYYFATASADKTVSMWSTDRMTPLRMFPDAYGDVSC
IDYHPNCNYIAGGSDDRYVRVWDVCSGTRVRLFGGHKASIIGVKFSPCGRYIVSLDIIGN
LMVWDLAYQRLVAAEVTEQKGTKGHISFTRDGGVFAVSHGNANIQLYSLDNLTSSVQSTG
AHNDAFMEPKINMEGFQIGSYPTKQTAVIGLHFTRRNLLLGFGCFGQ
NT seq 1944 nt   +upstreamnt  +downstreamnt
atgaacccacaggacaacgagaattcgaatagtcaattcttcgactctcctctcatgaat
cagaataatccgatggatgatggtcttctgtcgagaccaatgaacaacgagaccctccag
gcggttttggagtttttaagaaaaaacggactgtccgaaacggaggaacagttgacacgg
gaggcggggcctgtgttgaggaatgagggaaccagtggattgccgcccgaagaagcgata
tccgttgaattcgatgcatttgtgaagcacgcgaatgagtgttcagatgtgatacaagca
gagttcagtcagctgatattcccaatatttgctcatagttatattgctttgatggataaa
catccggataccgccaggaaattcttcaatcgattcaaaatattcattcccgaatgtttc
tcggaattcgttcataaactgtcactaattgaagaccaaatgacaatgagaccgaatgaa
tatgtgagagttctcagggagaataaggttctcgtcaaattatccaaaccgactcagaaa
catttggaatcgattcagacgagacttattggcgtcaagaatatcattgcaaagcatatc
aatattgaaagcgccgacgagggagcaatgagtcgaacgatgattgagagtcaaatgggc
ggaatactgggagtaattgggaaaggagaacggagacacaaaatgttattctcagttgtg
aaagacgaattgatgcagagtattgaaaagagaaaaacgaaaggaaaggatgttggaaag
aagatgccaacggcacaacactgtccccaacacgaccgtatccccctaccaccaatctcc
gaacacttacgagaagagcgtcgaaattggcttcgcgacgtgggaaaaatggcgataatc
actccagaaacgcccgtctcaatatgtatgtacacaacgataaatgcaccagtgggcgtg
gcttcgtgtgacttctcagacgattcgagcttcattgcgatgggtctatcggactcatcg
atagtcatcaacgcgatggatccgatgaataaaatgaaaaaattgagagatatggaattt
ttggaaaaaatcgatatcgagacggccgacaatgttcacgcgcaaatgtttgatctacaa
ggatcccagtcgagtgtacggtacacgggacacggtggaccagtgttctctgtgaatttc
tcacccgatcgacgacttcttctctcctcatctggagataagacaatccgattgtggagt
atggatgctcaaagaaatgtcgtcatttataggtgtccggcgatggtttggcaggctcaa
ttctgcaaccgcggttactacttcgcgacagcaagtgccgacaagacggtttcaatgtgg
tcaacagaccgtatgacacctcttcgaatgtttccagacgcatatggagatgtctcgtgt
attgactaccacccgaactgtaattatatcgcaggcggttcagacgatcgatacgtccgt
gtatgggacgtgtgttccggtacgagagtacgcttattcggtggtcataaagcgtcgatt
attggggtgaaattctcaccgtgtggacgatatattgtctcgttggatattattggaaat
ctaatggtttgggatttggcttatcagagattagtcgctgcagaggtcaccgagcagaag
ggaactaagggtcacatctcattcacacgtgacggtggcgtgttcgcagtctctcatgga
aatgcgaatattcaattgtactctttggataatttgacgagttccgtccaatcgaccgga
gcacataatgatgctttcatggagccgaaaataaacatggagggattccaaatcggatcg
taccccacaaaacagaccgccgtcatcggtctccacttcactcgccgcaatcttctcctc
ggtttcggctgtttcggacaataa

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