Caenorhabditis remanei (nematode): GCK72_000550
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Entry
GCK72_000550 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K10752
histone-binding protein RBBP4
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03082
ATP-dependent chromatin remodeling
crq03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
GCK72_000550
03083 Polycomb repressive complex
GCK72_000550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
crq03036
]
GCK72_000550
Chromosome and associated proteins [BR:
crq03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
GCK72_000550
Histone modification proteins
HAT complexes
HATB complex
GCK72_000550
HDAC complexes
Sin3A-HDAC complex
GCK72_000550
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
GCK72_000550
PRC2.2
GCK72_000550
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
GCK72_000550
Heterochromatin formation proteins
Other heterochromatin formation proteins
GCK72_000550
Chromatin remodeling factors
NuRD complex
GCK72_000550
NuRF complex
GCK72_000550
NuRF complex (fruit fly)
GCK72_000550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
CAF1C_H4-bd
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
MIOS_WD40
Beta-prop_SCAP
Beta-prop_NUP159_NUP214
Beta-prop_WDR75_1st
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_RIG_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Motif
Other DBs
NCBI-GeneID:
9821092
NCBI-ProteinID:
XP_003109140
UniProt:
E3M3S5
A0A6A5HR02
LinkDB
All DBs
Position
I:complement(3823091..3824530)
Genome browser
AA seq
414 aa
AA seq
DB search
MSEADSCVETTSREHRVWKKNAPFLYDTVVTRELEWPTLTVQWMPDVTKTDSSDTSVHRV
ILGTHTSNDVQNHLLISKFSITDAAELDDSKWDAEQQEFGGYGAGSAAKLEDEIRIVHQD
EVHRARYMPQNPIIIASRGPGDDVYIFDYTQHPSQPHDNKFRPQLRLKGHEGEGYGLSWS
NTSEGHLLTAGEDGAICHFDINAHQNIAGQLTPVSKYKGHDSNVQDVAFHALHPNVFASV
GDDRKLNIWDLRHPRFQLSSIGHNSDVTCVSYNPFNEFILATASADKTVAVWDVRNMGKR
MYTLRHHTDEIFQVAFSPHIETVLASSGSDDLVIVWDLSKVEDPSNDPATQPTAPPPEVV
FVHSGHLGKVADFSWNPNRPWTICSTDEYNKFQVWEVSEGVINPEKSEQESTTS
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaggcggattcgtgtgtagagacgacgagtcgagaacatagagtttggaagaaa
aatgctcctttcctctacgacacagtcgtcaccagagaactcgaatggcccactttaaca
gttcaatggatgcctgacgttactaaaaccgacagctcggacacttctgtacaccgagtg
atactcggaactcatacatcaaatgacgttcaaaatcatttattaatctcgaaattctcg
attactgacgccgccgagttagacgattccaaatgggatgcagaacagcaagaattcggt
ggctatggagcgggaagtgcggcgaaacttgaagatgagatacgaattgttcatcaagac
gaagtgcaccgagcacgatatatgccacaaaacccgattataattgccagtagaggcccc
ggtgacgatgtttatatttttgattatactcaacatccctctcaaccacatgataacaaa
ttccgaccacaattgcgactgaaaggacacgaaggggaaggatatggcctctcatggagt
aatacgagtgaaggtcatttattgacggccggagaggatggagcgatttgccattttgat
atcaatgcccaccaaaatattgctggtcaattaactccggtgagcaagtataaaggccac
gattcgaatgtacaggatgtcgctttccacgctcttcacccgaatgtctttgcatctgtg
ggagatgatagaaaattgaatatctgggatcttcgccacccgagattccaactctcgtcc
atcggacacaattccgatgtcacttgtgtctcttataacccattcaatgagttcattctt
gctacggcttctgcagataaaactgttgctgtgtgggatgttcgaaatatgggaaagaga
atgtacacgctgcgacaccatacggacgagattttccaagttgcattcagtccgcatatc
gaaacagttcttgccagtagtggatctgatgaccttgtcattgtatgggatctctcaaaa
gtggaagacccctccaatgatccagcgacgcagcccacagcccctccacctgaagttgtt
ttcgttcattctggtcacctaggaaaagttgccgatttctcatggaacccgaaccgtcca
tggacaatatgtagtactgacgaatataacaaatttcaggtttgggaagtctcggaaggc
gtcattaacccagagaaatccgaacaagaaagcaccactagttga
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