KEGG   Caenorhabditis remanei (nematode): GCK72_000550
Entry
GCK72_000550      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K10752  histone-binding protein RBBP4
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq03082  ATP-dependent chromatin remodeling
crq03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:crq00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    GCK72_000550
   03083 Polycomb repressive complex
    GCK72_000550
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:crq03036]
    GCK72_000550
Chromosome and associated proteins [BR:crq03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     GCK72_000550
  Histone modification proteins
   HAT complexes
    HATB complex
     GCK72_000550
   HDAC complexes
    Sin3A-HDAC complex
     GCK72_000550
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     GCK72_000550
    PRC2.2
     GCK72_000550
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     GCK72_000550
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    GCK72_000550
  Chromatin remodeling factors
   NuRD complex
    GCK72_000550
   NuRF complex
    GCK72_000550
   NuRF complex (fruit fly)
    GCK72_000550
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 CAF1C_H4-bd WD40_Prp19 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 WDR55 EIF3I Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st MIOS_WD40 Beta-prop_SCAP Beta-prop_NUP159_NUP214 Beta-prop_WDR75_1st NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_SPT8 WD40_RFWD3 Beta-prop_RIG_1st Beta-prop_TEP1_C WDR90_beta-prop_4th
Other DBs
NCBI-GeneID: 9821092
NCBI-ProteinID: XP_003109140
UniProt: E3M3S5 A0A6A5HR02
LinkDB
Position
I:complement(3823091..3824530)
AA seq 414 aa
MSEADSCVETTSREHRVWKKNAPFLYDTVVTRELEWPTLTVQWMPDVTKTDSSDTSVHRV
ILGTHTSNDVQNHLLISKFSITDAAELDDSKWDAEQQEFGGYGAGSAAKLEDEIRIVHQD
EVHRARYMPQNPIIIASRGPGDDVYIFDYTQHPSQPHDNKFRPQLRLKGHEGEGYGLSWS
NTSEGHLLTAGEDGAICHFDINAHQNIAGQLTPVSKYKGHDSNVQDVAFHALHPNVFASV
GDDRKLNIWDLRHPRFQLSSIGHNSDVTCVSYNPFNEFILATASADKTVAVWDVRNMGKR
MYTLRHHTDEIFQVAFSPHIETVLASSGSDDLVIVWDLSKVEDPSNDPATQPTAPPPEVV
FVHSGHLGKVADFSWNPNRPWTICSTDEYNKFQVWEVSEGVINPEKSEQESTTS
NT seq 1245 nt   +upstreamnt  +downstreamnt
atgagtgaggcggattcgtgtgtagagacgacgagtcgagaacatagagtttggaagaaa
aatgctcctttcctctacgacacagtcgtcaccagagaactcgaatggcccactttaaca
gttcaatggatgcctgacgttactaaaaccgacagctcggacacttctgtacaccgagtg
atactcggaactcatacatcaaatgacgttcaaaatcatttattaatctcgaaattctcg
attactgacgccgccgagttagacgattccaaatgggatgcagaacagcaagaattcggt
ggctatggagcgggaagtgcggcgaaacttgaagatgagatacgaattgttcatcaagac
gaagtgcaccgagcacgatatatgccacaaaacccgattataattgccagtagaggcccc
ggtgacgatgtttatatttttgattatactcaacatccctctcaaccacatgataacaaa
ttccgaccacaattgcgactgaaaggacacgaaggggaaggatatggcctctcatggagt
aatacgagtgaaggtcatttattgacggccggagaggatggagcgatttgccattttgat
atcaatgcccaccaaaatattgctggtcaattaactccggtgagcaagtataaaggccac
gattcgaatgtacaggatgtcgctttccacgctcttcacccgaatgtctttgcatctgtg
ggagatgatagaaaattgaatatctgggatcttcgccacccgagattccaactctcgtcc
atcggacacaattccgatgtcacttgtgtctcttataacccattcaatgagttcattctt
gctacggcttctgcagataaaactgttgctgtgtgggatgttcgaaatatgggaaagaga
atgtacacgctgcgacaccatacggacgagattttccaagttgcattcagtccgcatatc
gaaacagttcttgccagtagtggatctgatgaccttgtcattgtatgggatctctcaaaa
gtggaagacccctccaatgatccagcgacgcagcccacagcccctccacctgaagttgtt
ttcgttcattctggtcacctaggaaaagttgccgatttctcatggaacccgaaccgtcca
tggacaatatgtagtactgacgaatataacaaatttcaggtttgggaagtctcggaaggc
gtcattaacccagagaaatccgaacaagaaagcaccactagttga

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