KEGG   Caenorhabditis remanei (nematode): GCK72_000551
Entry
GCK72_000551      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K10752  histone-binding protein RBBP4
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq03082  ATP-dependent chromatin remodeling
crq03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:crq00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    GCK72_000551
   03083 Polycomb repressive complex
    GCK72_000551
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:crq03036]
    GCK72_000551
Chromosome and associated proteins [BR:crq03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     GCK72_000551
  Histone modification proteins
   HAT complexes
    HATB complex
     GCK72_000551
   HDAC complexes
    Sin3A-HDAC complex
     GCK72_000551
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     GCK72_000551
    PRC2.2
     GCK72_000551
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     GCK72_000551
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    GCK72_000551
  Chromatin remodeling factors
   NuRD complex
    GCK72_000551
   NuRF complex
    GCK72_000551
   NuRF complex (fruit fly)
    GCK72_000551
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR5 WD40 CAF1C_H4-bd Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_Gbeta Beta-prop_WDR75_1st Beta-prop_Aladin Beta-prop_EML EIF3I WD40_MABP1-WDR62_2nd WD40_RFWD3 Beta-prop_WDR41 Beta-prop_WDR19_1st Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_SPT8 WD_LRWD1 Beta-prop_DCAF12 Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_RIG_1st MIOS_WD40 NBCH_WD40 Beta-prop_SCAP Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 9820996
NCBI-ProteinID: XP_003109310
UniProt: A0A6A5HLG7 E3M3S6
LinkDB
Position
I:complement(<3824849..>3828295)
AA seq 477 aa
MLTSDLIRESEDGPVSGSPKMYPRTASAMRRMLSMSSSSSRVDGRSRIELRAGSVGDGRE
MATLEDGTSEDRVANDEYKIWKKNTPFLYDLVMTHALEWPSLSVQWLPEVTKDSSDHTVH
RLILGTHTSDEQNHLLISKISMPTDEAQFDASRYDTERSEFGGFGAVNGKVEPDIRINHE
GEVNRARYMPQKTNIIATKSPSADVYIFDYLKYPAIPRDNTFNPLIKLKGHSKEGYGLSW
NPNKEGLILSASDDQTVCHWDINASQNVSGELMARDVFKGHESVVEDVAWHVLHDGVFGS
VGDDKKLLIWDVRTNTPGHSIDAHTAEVNCLAFNPYSEFILATGSADKTVALWDLRNLRL
KLHSFESHRDEIFQVQWSPHNETILASSGTDKRLHVWDLSKIGEDQSAEDAEDGPPELLF
IHGGHTAKISDFSWNPNEAWVVCSVSEDNILQVWQMADNIYNEVEEDTPAEMVERPM
NT seq 1434 nt   +upstreamnt  +downstreamnt
atgctaacttctgatttgatacgagaatcagaggatggtccggtttctggaagtcccaaa
atgtatccaagaactgcttcggcgatgagacggatgttatcaatgagctcttcctcgtca
agagtcgatggaagatcaaggatcgaattgcgagctggatctgttggggatggcagggaa
atggccactttggaggatggtacctcagaagatcgtgttgccaacgatgaatacaaaatc
tggaagaagaacactccgtttttgtatgatctcgtcatgacacatgcactggaatggcca
tctttgagtgtgcaatggctcccagaagtcacaaaggatagcagtgatcacactgttcat
cgactgattctcggtacacacacatcggacgagcaaaaccatcttctcatctccaaaatt
agcatgccaactgatgaggcgcaattcgatgcttctcgttacgacactgaacgtagtgaa
ttcggaggttttggtgctgtcaacgggaaagtcgagccagatatccgtatcaaccacgag
ggcgaagtgaaccgtgctcgatacatgccacaaaagacgaacatcattgccaccaagtcc
ccgtctgctgatgtttacatttttgactatctaaagtatccagctatcccacgtgataac
acgttcaatccattgatcaagctgaaaggacattccaaagaaggatacggattgtcgtgg
aacccaaacaaggaaggactcattctctcggcttcagatgatcagacagtctgtcattgg
gatatcaatgcaagccagaatgtcagcggggaactgatggcaagagacgttttcaaggga
cacgaatctgttgtggaagatgttgcgtggcatgtccttcatgacggtgttttcggatct
gtcggtgacgacaagaaattgctgatttgggatgttcgaacaaatactccaggacactca
atcgacgctcacaccgctgaggtcaactgtttggctttcaacccatactcagaattcatt
ttggctactggctctgctgacaagactgtcgctctctgggatctccgtaatcttcgcctc
aaacttcattcattcgagtcgcacagagacgaaatcttccaagtccaatggagcccgcat
aatgagactattcttgcatccagtggaaccgacaagcgactccatgtgtgggatctgtca
aagattggagaagaccaatctgctgaggatgccgaggatgggccaccagagcttctgttc
attcacggaggacataccgccaaaatcagtgatttctcgtggaatccaaatgaggcttgg
gtggtgtgcagtgtctctgaagataacattcttcaagtatggcagatggcagacaacatt
tacaacgaagttgaagaagatactccagccgaaatggttgaaagacctatgtga

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