Caenorhabditis remanei (nematode): GCK72_000614
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Entry
GCK72_000614 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
GCK72_000614
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
crq01009
]
GCK72_000614
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crq03019
]
GCK72_000614
03036 Chromosome and associated proteins [BR:
crq03036
]
GCK72_000614
Protein phosphatases and associated proteins [BR:
crq01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
GCK72_000614
Messenger RNA biogenesis [BR:
crq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
GCK72_000614
Chromosome and associated proteins [BR:
crq03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
GCK72_000614
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
PKHD_C
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
9821137
NCBI-ProteinID:
XP_003109197
UniProt:
E3M315
LinkDB
All DBs
Position
I:4055463..4057412
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AA seq
497 aa
AA seq
DB search
MVMEVDEPAVAATTSQNEQQEVQQNDVDMDTSEGPIEPDQTFEPVDQITWKFNQVKGNID
ADVHTEADVISCVEFSHDGEYLATGDKGGRVVIFQRDQSGKYVKGVRSREYNVYSTFQSH
EPEFDYLKSLEIDEKINQIRWLKKKNAANFILSTNDKTIKLWKISERERKIGDDAWNLPR
TNRINTSSFRGKLQIPSIVPMELIVEASPRRVYGNAHTYHVNSISVNSDQETFLSADDLR
VNLWNLEITNESFNIVDIKPANMEELTEVITAAEFHPTQCNWFVYSSSKGSIRLCDMRDR
ALCDAYAKIFEEPEDPQSRSFFSEIIASVSDVKFSHNGRYLLTRDYLTVKVWDLNMESQP
VETYPVHNYLRTKLCALYENDSIFDKFECDWSGDDKHILTGSYHNLFRSYARGNNQGDAK
TWEARPQENHATLRSRFVVPSAKRKRNNLSSSGEQTEEDLSSDQLQFDRKILHTAWHPKD
NIIALAATNNLYIFSDV
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggtaatggaagtggacgaaccagcagttgcggcaacgacatcccaaaatgagcagcag
gaggtgcagcagaatgacgtcgatatggacacttctgagggaccaatcgagccggatcag
acgttcgaaccggtagaccaaattacttggaaattcaaccaggtgaaaggaaatatagat
gccgatgtgcacactgaagctgatgtcatttcgtgtgtggaattttcacacgacggtgag
tatttggctactggagacaaaggaggacgtgtagtaatttttcaaagagatcaaagcggg
aaatacgtgaaaggagttcgatcgagggagtacaacgtgtattcaacattccaatctcat
gaacctgaatttgattacctgaaatcgttagaaattgatgagaaaattaatcaaatcagg
tggctgaaaaagaagaacgcagccaatttcatcctctctacaaatgacaaaacgatcaag
ctgtggaagataagtgaacgagaacgcaagataggagatgatgcttggaacttgccgaga
acgaacagaatcaacacgtcatccttccgggggaaactacaaattccgtcgattgtacct
atggagttgatagttgaagccagcccgcgacgggtttatggaaatgctcacacttatcat
gtcaacagtatttcagtcaattctgatcaggaaacattcctatctgccgatgatctacga
gtaaacctttggaatctggaaataactaatgagtctttcaacattgtcgacataaaacct
gccaatatggaagagctaacagaagtcattaccgccgccgaattccatccaacacaatgc
aactggttcgtttactcgtcatcaaaaggatcgattcgattgtgtgacatgagagatcgt
gctctttgtgatgcatatgctaaaatcttcgaagaaccagaagacccacaatccaggtct
ttcttctcagagattattgcatctgtgagtgatgtcaaattctcgcataatggaagatat
ttgctcaccagagactatctcactgtgaaggtgtgggatctgaatatggagtcacagcca
gttgagacatacccagtgcataattatctccgaacgaagctgtgtgctctttacgagaac
gattcgattttcgataagttcgaatgtgattggagtggtgacgataagcacattctcacc
ggctcttatcacaatctgttccgatcctacgctcgtggtaataatcaaggagatgcgaag
acatgggaggcccggccgcaagaaaatcacgccacgcttcgatctcgattcgttgttccg
tccgccaagcgaaagaggaacaatctgtcgtcgagcggtgaacagacggaggaggatcta
tcatcagaccaacttcaattcgatcgcaaaatattgcacactgcctggcatccaaaggat
aatatcattgcacttgccgcaactaacaacctctacatcttttctgatgtttaa
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