Caenorhabditis remanei (nematode): GCK72_001032
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Entry
GCK72_001032 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03013
Nucleocytoplasmic transport
crq03015
mRNA surveillance pathway
crq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GCK72_001032
09122 Translation
03013 Nucleocytoplasmic transport
GCK72_001032
03015 mRNA surveillance pathway
GCK72_001032
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crq03019
]
GCK72_001032
03041 Spliceosome [BR:
crq03041
]
GCK72_001032
03009 Ribosome biogenesis [BR:
crq03009
]
GCK72_001032
03012 Translation factors [BR:
crq03012
]
GCK72_001032
Enzymes [BR:
crq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GCK72_001032
Messenger RNA biogenesis [BR:
crq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
GCK72_001032
mRNA cycle factors
Stress granule specific factors
GCK72_001032
Spliceosome [BR:
crq03041
]
Complex C
Other components
EJC/TREX
GCK72_001032
Ribosome biogenesis [BR:
crq03009
]
Eukaryotic type
90S particles
Helicases
GCK72_001032
Translation factors [BR:
crq03012
]
Eukaryotic type
Initiation factors
eIF-4
GCK72_001032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
9810928
NCBI-ProteinID:
XP_053591455
LinkDB
All DBs
Position
I:complement(5888105..5889476)
Genome browser
AA seq
402 aa
AA seq
DB search
MAGGSGPKKEKDEMASVEFESSEEVNVIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAI
PAILKARDVIAQAQSGTGKTATFSISVLQSLDTQVRETQALILSPTRELAVQIQKVVLAL
GDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEA
DEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLE
GIKQFFVAVDREEWKFDTLIDLYDTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHG
DMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSG
RFGRKGVAINFVKQDDVRILRDIEQYYSTQIDEMPMNIADII
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggctggtggaagtggaccaaaaaaagagaaggatgagatggcatctgtggaattcgag
tcttctgaggaagtcaatgtaatcccaacatttgataaaatggggctccgagaggacctt
ctacgtggaatttatgcttatggattcgaaaaaccatcagcaattcaacaaagagcgatt
cctgcaattctcaaggctcgggatgtgatcgctcaagcacaatctggtacaggaaagact
gcgacattttcgatttcagtacttcaatcattggatacacaagttcgagagactcaagct
cttattctgtctccaacgagagaactggctgttcaaattcaaaaagttgtccttgctctc
ggagactatatgaacgtccagtgtcatgcttgtatcggaggaacgaatctcggtgaagac
atcagaaaactcgattatggacaacacgttgtctctggaaccccgggacgtgtgtttgat
atgattcgccgtcgtaatctccgtactcgtgccatcaaactgcttgtattggatgaagcc
gatgaaatgttaaacaagggattcaaagaacaactatacgatatctatcgttatcttcca
cctggagcacaagttgttcttctctccgccacacttcctcatgagattttggagatgacc
agtaaattcatgacggatcccatcagaattcttgtaaaacgtgatgagttgacactcgaa
ggaatcaagcaattctttgtggctgttgatcgagaggaatggaagttcgatactcttatc
gatctttatgatactctcacaatcactcaagctgtgctcttctgtaatacacgtagaaag
gtcgactggttgactgacaagatgaaggaggccaacttcactgtatcatcaatgcatgga
gatatggagcagaaggatcgtgatgaagtgatgaaagaattcagagccggaactacgaga
gtactcatttcaactgatgtttgggctcgtggtttggatgttccacaggtttcattggtc
atcaactacgacttgcccaacaaccgtgagctctacattcaccgtatcggtcgttcagga
cgtttcggacgtaagggagttgccatcaacttcgttaagcaagacgacgtcagaatcctc
cgagacattgaacagtactactcaacacaaatcgatgaaatgccgatgaacatcgctgat
atcatctaa
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