KEGG   Caenorhabditis remanei (nematode): GCK72_001112
Entry
GCK72_001112      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K03129  transcription initiation factor TFIID subunit 4
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:crq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    GCK72_001112
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:crq03021]
    GCK72_001112
   03036 Chromosome and associated proteins [BR:crq03036]
    GCK72_001112
Transcription machinery [BR:crq03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     GCK72_001112
   Coactivators
    SAGA/TFTC/STAGA complex
     GCK72_001112
Chromosome and associated proteins [BR:crq03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    TFTC complex
     GCK72_001112
SSDB
Motif
Pfam: TAFH TAF4
Other DBs
NCBI-GeneID: 9801945
NCBI-ProteinID: XP_003111384
UniProt: E3LXZ0 A0A6A5HNV6
LinkDB
Position
I:complement(<6202509..>6204907)
AA seq 553 aa
MSLPRFRLVQGKALGERSTPPVGANMTPEPPQPQIKQEVEYNADTPEQSIQNIKTESPVS
PQQQVMGGTPQPPLMMNQRPIQQMHYQPQPQPQHQPQHQPQPQHQPQPQPQPQPQPPQQF
PQMIPPNQNQAAQNISAEERNVQKCVRFLKTLISLSNNVDAEMPDKAARVKNLIQGVIYM
ETTAEEFTQDLQQVLKSQAQPHLLPFLQNTLPALRNAVRNGSASVEDVHPPPGYVFNNGR
VPLPQLPPHPQISQQSHTPMAIQQPIGSQQIINRLNGPVIQQRPPLNNGPPLQSTPQIPV
VRTMSGQAGPMALGQIPSGPQQMTPIPQQTAPQTPQNLQNSMPPSGPVPMEVDPEPARTR
QYPEGSLKSSILKPDEVLNRITKRMMASCSVEEEALIAISDAVESHLREMITMMAGVAEH
RVESMRIPDNYMAIDDVKRQLRFLEDLDRQEEEMRESREKESLIRMSKNKNSGKETIEKA
KEMQRQDAEAKRNRDANAAAIAALSTNRTVKNKWEGASSASTAPRPRTVRVTTRDLHLLV
NQDNRFNGFVYYR
NT seq 1662 nt   +upstreamnt  +downstreamnt
atgagtcttcctcgatttcgtctagtacaaggaaaagcgctgggcgaacggtccacgcca
ccagtaggagccaatatgacaccggaaccgcctcagccacagataaaacaggaggtagaa
tataatgcagacactccggagcaaagcattcaaaatatcaagacagaaagcccagtttca
ccccaacaacaagtcatgggtggaactccgcaacccccactgatgatgaatcaacgacct
atacaacaaatgcattatcaacctcaacctcaacctcaacatcaaccccaacatcaacca
caacctcaacatcaaccccaacctcaacctcaacctcaacctcaaccacctcagcaattc
cctcaaatgatacctccaaaccagaatcaagcagctcaaaacatatccgctgaagagaga
aacgttcaaaaatgtgttcgatttttgaaaacactaatcagtttgtcgaataatgtagat
gcagagatgccagacaaggcggcaagagtaaaaaatttgatccagggtgtaatctacatg
gaaacgacagctgaagaattcactcaagatcttcaacaggtcctcaagtcacaagcacaa
ccacatcttctaccattccttcagaacacacttccagctttgagaaatgctgtgagaaat
ggaagtgccagtgtagaagatgttcatcccccacccggatacgttttcaacaatggacgt
gttccacttccacaacttcctccacatccacaaatttcacaacaatcgcatacaccaatg
gcaattcagcaaccaattggttcccaacaaataatcaatcgattgaatggtccagttata
cagcagagacctccactgaacaacggaccaccacttcaatcgactcctcagattccagtt
gttcgtacgatgagtggacaagcaggaccaatggctctagggcaaataccttctggacca
caacagatgacaccgattccacaacaaactgcaccacagactcctcaaaatcttcagaat
tctatgcccccgtccggtccggttccaatggaagtagatccggagccggcgagaacacga
cagtatcccgaaggatcactgaaatcatcgattctaaaaccagacgaggttctcaacagg
atcactaaacgaatgatggcatcatgttctgtggaagaggaggcactcattgcaatttca
gatgcagtggaatcacacttgcgggagatgataacgatgatggctggggtggcagaacat
cgtgttgagtcgatgagaattcctgataattacatggcaattgatgatgtaaaacgacaa
cttcgatttttggaagatttggatcgacaagaggaggaaatgagagaatcgagagaaaaa
gaatcattgatccgaatgagtaaaaataagaattctggaaaagagacgattgaaaaagca
aaagaaatgcagaggcaagatgctgaagcgaaacgaaatcgtgatgcaaatgcagctgca
attgcagcattgtcaaccaatcgaacggttaagaataaatgggaaggagcgtcgtcagca
tcaactgcaccacgcccacgcactgttcgagtaaccactcgtgatcttcaccttctagtc
aatcaggataatcgatttaatgggttcgtttactatcgatga

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