KEGG   Caenorhabditis remanei (nematode): GCK72_001613
Entry
GCK72_001613      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq03082  ATP-dependent chromatin remodeling
crq03083  Polycomb repressive complex
crq04213  Longevity regulating pathway - multiple species
crq04330  Notch signaling pathway
crq04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:crq00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    GCK72_001613
   03083 Polycomb repressive complex
    GCK72_001613
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    GCK72_001613
   04350 TGF-beta signaling pathway
    GCK72_001613
 09150 Organismal Systems
  09149 Aging
   04213 Longevity regulating pathway - multiple species
    GCK72_001613
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:crq03036]
    GCK72_001613
Enzymes [BR:crq01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     GCK72_001613
Chromosome and associated proteins [BR:crq03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     GCK72_001613
   HDAC complexes
    Sin3A-HDAC complex
     GCK72_001613
    BRAF-HDAC complex
     GCK72_001613
    REST complex
     GCK72_001613
    SHIP complex
     GCK72_001613
    MiDAC complex
     GCK72_001613
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     GCK72_001613
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    GCK72_001613
  Chromatin remodeling factors
   NuRD complex
    GCK72_001613
SSDB
Motif
Pfam: Hist_deacetyl polyprenyl_synt
Other DBs
NCBI-GeneID: 9817781
NCBI-ProteinID: XP_003114889
UniProt: E3LNB2
LinkDB
Position
I
AA seq 782 aa
MFASRKLVEKALGEVKKKFVGVVSAKLPADGMEYDLVQYRCRNLFDNTVIGGKYSRASLC
VDTIRALQPHLRDETQELQAVCEAAATLEIIQSFYLIADDIMDNSETRRGKQCWFRREGV
GMSAINDAFIMDSFVEDILRLALPGHVNLDRLCEAYRKSKQKTLIGQFLDTSSVNQISSF
TWDRYELMVENKTSHYTVFHPLQMALIISDVLAYHGAVKKAAYQIGFLFQSQDDFLDVYG
DPTITGKIGTDIQDGKCTWLAVRALQKMHSTPQKSAHLITDFKQSFGSSDPEKIEKIKKI
YNELQLREEFRRTNIEMPTSLQHSKPRVSYYYDGDFGNFYYGQGHPMKPHRVRMTHSLIV
NYGLYRALNVMRPARASFYEMTRYHSDDYINFLRQVKSDNISTLTDQMTRFSVGEDCPVF
DGMYEFCQLSCGGSLAAAAQLNRKESDIAINWMGGLHHAKKSEASGFCYSNDIVLAILEL
LKVHKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKHGEYFPGTGDLKDVGAGHGKYYA
LNVPLRDGVDDFTYERIFQTVMGEVMARFQPEAVVLQCGADSLAGDRLGVFNLTTYGHGK
CVEYMKSFNVPLLLVGGGGYTIRNVSRCWVYETSIALNLDVADDLPVNDYFEYFIPDYKL
HIKPLTTLINFNTPEFIDQTIVSLLENLKQLPHVPSVQMHPTSISSDAVVKTFDQSLRRD
HQNDDIRESRFDEDVRVENSSEFYDAREPTSRNTQSNKRQRNMNTAEVEGFKKTRIGEED
DV
NT seq 2349 nt   +upstreamnt  +downstreamnt
atgttcgccagtagaaagctggtggaaaaagcgcttggcgaagtgaaaaagaagtttgta
ggggttgtttcggcgaaattaccagccgatggaatggaatacgatttagttcaatatagg
tgtagaaatttatttgacaacactgtaatcggtgggaaatactcgcgagcgtcgctttgt
gtcgacacaatacgagcactacagccgcatttacgagatgaaacacaggagttacaggcg
gtttgtgaagcagctgcgacgctggaaattattcaaagtttctatctgatcgccgacgac
atcatggacaattccgagacacgacgtggaaaacagtgttggttccggagagaaggtgtg
gggatgtcggctatcaatgacgccttcataatggattcattcgttgaagatattcttaga
ctcgctcttcctggacatgtcaatcttgacagattgtgtgaagcttatcggaagtcgaaa
caaaaaacattgattggacagttcctggatacatcatccgtcaatcaaatttcttcgttc
acctgggatcgttacgaattgatggttgagaacaagacatctcattatacagtattccat
cctcttcaaatggctcttatcatttctgatgtacttgcttatcatggtgccgtaaaaaaa
gccgcatatcaaatcggattcttgtttcaatcgcaggacgactttttagatgtttatgga
gatccaacgattactggaaagattggaactgatatacaggacggaaaatgtacgtggctt
gccgttcgtgctctccaaaaaatgcactctacaccacaaaaatctgctcatctcattact
gatttcaagcaaagtttcggatcttctgatccggaaaaaatcgaaaaaatcaagaaaatc
tataatgagttgcaattgagagaggaatttcgtcgcactaatatcgagatgccaacttca
cttcaacactcaaaaccacgtgtctcgtattattatgatggagatttcggaaatttctat
tacggacagggacacccgatgaaaccacatcgagttagaatgacacacagtttgattgtc
aattacggattgtatcgggctttgaatgtgatgcggcctgcgcgagcttcgttttacgaa
atgactcgttaccactcggatgattacatcaattttcttcgacaagtgaagtctgacaat
atttcaactcttactgatcaaatgacacgtttctcagttggtgaagactgtccagtattc
gatggaatgtatgaattttgtcagttatcatgtggaggatccctcgctgctgcagcccaa
ttgaacagaaaagagtcagatattgcaattaattggatgggtggacttcatcatgcaaag
aaatcagaagcttcagggttctgctattcgaatgatatcgttttagcgattctagaattg
ttaaaagttcacaaaagagttctctacatagatattgatgttcatcatggtgatggagtt
gaagaggccttttatacaactgatagagtaatgacggtctcgtttcataaacatggagaa
tatttcccaggaaccggagatttaaaagacgttggagctggacacggcaaatattacgca
ttgaacgttccgctccgagatggtgttgatgattttacatacgaaagaattttccaaaca
gttatgggcgaagtgatggcacggttccaaccagaagcagttgttctccaatgcggagct
gattccttggctggagatcgacttggagtattcaatttgactacatatggacatggaaaa
tgcgtggagtacatgaaaagtttcaatgttcctctgttgcttgtcggtggtggtggatat
actattcgaaacgtttcaagatgctgggtgtacgaaacgtcgattgctttaaatttggat
gttgctgatgatcttcccgtgaacgattacttcgaatacttcatcccagactacaaactt
catataaaaccactcacaactctaatcaatttcaatactccagaattcattgatcagacg
attgtctcccttttagaaaatttgaaacaactccctcatgtcccgtcagttcaaatgcat
cccacttcaatcagttctgatgcagttgtgaagactttcgatcagagtcttcgaagagat
caccagaacgatgacatacgagagtcacgtttcgatgaagatgttagagtggaaaattct
tcagaattctacgatgctcgggagccaacttcgagaaacactcaatccaacaagcggcag
cgaaacatgaacactgcagaagtggaaggtttcaaaaagacacgaatcggagaggaagat
gatgtgtga

DBGET integrated database retrieval system