KEGG   Caenorhabditis remanei (nematode): GCK72_001693
Entry
GCK72_001693      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K12816  pre-mRNA-processing factor 17
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:crq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GCK72_001693
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:crq03041]
    GCK72_001693
Spliceosome [BR:crq03041]
 Complex C
  Other components
   Step II factors
    GCK72_001693
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_RIG_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML WD40_RFWD3 ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_DCAF4 Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st Beta-prop_SPT8 WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_SCAP PEP5_VPS11_N
Other DBs
NCBI-GeneID: 9817833
NCBI-ProteinID: XP_003114876
UniProt: E3LN68
LinkDB
Position
I:8381366..8383440
AA seq 568 aa
MDALRAYGESDSEQSEDDVIMQEISKGKSVTLGTDRAIVMAPDVQSKSVIKEVAIVDPKT
KEIKSNPKFEQLFKSESGPVNPFKSEQQRSQKNTLTGFVEPAHLNEFHFNRQIRSFDTLG
YAQNPTAETGTSQFVGDVKKAETEKGVSLFESKKTGGEKRKRVRNDDSADVDGYTGPWSR
FADEKTVAKPSPELQKQMDEIVKKRQEKSRRFKKEKEDSEQMAEESSTLHLKEAEDYQGR
SFLVPPSFTGVNLREDYVPERCFVPKKLIHTYRGHNKGVNFLQWFPKSAHLFLSCSMDTK
IKLWEVYDRQRTVRTYSGHKLPVREVAFNNEGTEFLSASFDRYVKLWDTETGQVKQRFHT
GHVPYCLKYHPDEDKNHMFLVGMQNKKIIQWDSRSGEIVQEYDRHLQAVNSITFFDKNRR
FASTSDDKSVRIWEWEIPVDTKLIQNVGLHAIPTMTKSPNDKWVVGQCMDNRIVLFQLVD
DKLRFSKKKAFRGHNAAGYACNIDFSPDQSFLISGDADGKLFIWDWRTHKIVGKWKAHDS
TCIAALWHPHEKSRMITAGWDGLIKMWN
NT seq 1707 nt   +upstreamnt  +downstreamnt
atggacgcgctacgagcgtatggcgaaagtgacagtgaacaatcagaggacgatgttatc
atgcaagagatttccaaaggaaaatcagtaacacttggaacggatagagcaattgtaatg
gctccagatgttcagtcaaaaagtgtaatcaaagaagtagcaattgtggatccgaagaca
aaagagatcaaatcgaatccgaaattcgaacagctgttcaaatccgagtctggaccagta
aatcccttcaaatcagagcaacaacgttctcaaaaaaatactttaactggattcgtcgag
cccgctcatttgaatgaattccatttcaatcgtcaaatccggagttttgatactcttgga
tacgcccagaatccaactgcagaaactggaacttcacagtttgttggtgatgtcaaaaaa
gcagaaaccgagaaaggagtatcactgtttgaatcaaagaagactggtggtgaaaagaga
aaacgagtgagaaatgatgattcagctgacgtcgacgggtacacaggaccatggagtcga
tttgcagatgagaagactgtggcaaagccatctccagaacttcagaaacaaatggatgaa
attgttaagaagcgacaagaaaaaagtagaagattcaagaaagaaaaagaagacagtgaa
caaatggctgaagaaagctcaactcttcatctcaaagaagctgaagactaccaaggtcgc
tcattcctggttccacctagtttcacaggagtcaatcttcgagaagactacgttccggaa
cgatgctttgttcctaaaaaactcattcatacctatcgtggccacaacaaaggtgtcaat
ttccttcaatggttcccaaaaagtgctcatctattcctttcctgttcaatggatacaaaa
atcaagttgtgggaggtttatgatcgtcaacgaacggtgcgaacttattctggacataaa
cttccagtcagagaagttgcattcaataacgagggaactgaattcttatcagcttcattc
gatcgatatgtgaagttgtgggatactgaaacaggacaagttaaacaaagattccatact
ggacatgtcccgtattgtttgaaatatcatccagatgaagacaagaatcatatgttcttg
gttggaatgcaaaacaagaaaatcattcaatgggactcccgatctggagaaattgttcaa
gaatacgatcggcatcttcaggctgtaaactcgattacattctttgataaaaatcgacga
ttcgcatcgacttctgatgacaaatctgtcaggatttgggaatgggagattccagtagat
acgaaactcattcaaaatgttggtctacatgctattccaacgatgaccaagagtccaaat
gacaaatgggtggtcggacaatgtatggataaccgtatagttcttttccaactagtcgac
gacaagcttcgattctcgaaaaagaaggcttttcgcggacacaacgcagccggatatgca
tgcaacattgatttctctcctgatcaaagtttccttatttctggtgatgctgatggaaaa
ttattcatctgggattggagaacacataaaattgttggaaaatggaaggcacatgacagc
acgtgtattgctgcactgtggcatccgcatgagaagagtcgaatgattactgctggatgg
gatggactcatcaaaatgtggaattga

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