Caenorhabditis remanei (nematode): GCK72_001707
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Entry
GCK72_001707 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K14323
protein CASC3
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03013
Nucleocytoplasmic transport
crq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
GCK72_001707
03015 mRNA surveillance pathway
GCK72_001707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crq03019
]
GCK72_001707
Messenger RNA biogenesis [BR:
crq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
GCK72_001707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
9819249
NCBI-ProteinID:
XP_053591732
UniProt:
A0A6A5HNS7
LinkDB
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Position
I:8428035..8430744
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AA seq
618 aa
AA seq
DB search
MAAESATTETVEKNGNEESTVEIKQNGDAPAISQVPPTEVVKPSKEEEEEDEPTPAKKRS
GSEEKTEIRDDAPEDVQNDEDDEDAPDGKSNLDDDQNVENPAYIPKTGRFYMHDDGRRVD
VTSQGNDDDDSDDRRNLKKSRADGDWKHDRFDEKFQRPKTKKQIVTKYGFDIRHKEGEVG
TPEEKETAPESTEEESSDTRQVTRQQKERRVSSSTGRGAKSGRGGAGRRPMKQREREDTV
DESEGGGDGKGNDDEEQTRPAQKRQVKQQEKPPRKQKPVAPPSSEENEEEEEDDGAIRRG
QRRTVPLRRGTSGPPSRLRGRLTQGPPRRSSGVSAPSHPPRQSPVRGTGRRQNDTTTSTR
GAPLQVTSSSNSRRDYSNQADRNDDRFENHRRGVIRGASRGTGGTRGSSYGGRGAAIRGG
VRGSGAPRYGVRRTDTSEQSEGYQRGGSGTDYSSPRPPAHQQSPPTRTYQPTSTPAFRGG
SSNSHPHPSANVYPSSTRGNYSGNMEYAPRGGHGYHGPPPPQQPHHNHHHQQKRFVQGPP
PPMVAVGVLPGNVVPPPQMTRGTTHGGHGNHHNGGQQRIRQPTDVVYFDPQQQQGNRQLP
PRSKKVIPIVDPNKADQK
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgaatcggcaacaacggagaccgtcgaaaagaatggaaacgaggagtcaacg
gtagaaataaaacaaaatggagatgctccagctatttctcaggtccctccaacagaagtc
gtcaaaccatcaaaagaagaagaagaagaagacgagcctactcccgccaagaaaagaagc
ggttcggaggagaaaaccgaaattcgagatgatgctccagaagacgtccaaaacgatgag
gacgacgaggacgccccagatgggaagtcaaatctggatgacgatcagaacgtggagaat
ccagcatatattccaaaaactggacggttttatatgcatgatgatggtcgaagagtagat
gtcacttcacagggaaacgatgatgatgacagcgatgatcgtcgaaatctgaaaaagagt
cgtgcggatggagactggaaacacgaccgtttcgatgagaagttccaacgaccaaagacc
aaaaaacagattgtgacgaagtatggattcgatattcgacacaaagaaggagaggtcgga
actccagaagagaaggagacagctccagaatcaacagaagaagaatcatcagacacacgt
caagtaacaagacaacagaaagaacgaagagtttcttcttcgactggaagaggggcgaaa
agtggaagaggcggagctggaagaagaccaatgaaacaaagagaaagggaggatactgta
gatgaatcagaaggcggaggtgatggaaaaggaaatgatgacgaggaacagacacgtcca
gcacagaagagacaggtcaagcagcaagagaagccacctaggaagcagaagccagttgcc
cctccttccagtgaagaaaacgaagaagaggaagaagatgatggagctattcgacgtggt
caacggcgtaccgttcctcttcgacgtggaacatctggacctccatcacgtctacgtggg
cgtctgacccaaggaccaccacgccgttcatccggtgtctcagctccatctcatccaccg
agacaatcgccagtacgtggaaccggaagacgtcaaaatgacaccaccacctctacaagg
ggcgcaccattacaagtgacgtcatcttcaaattctcgacgtgattacagtaaccaggcg
gaccgaaatgacgatagatttgagaatcatcgacgaggagttattcgtggagcttctaga
ggtactggagggacaagaggctcgagttatggaggaagaggagctgcaattagaggtgga
gtcagaggatctggagcgccaagatatggagtaagaagaactgatacatcagaacaaagt
gaaggatatcaaagaggtggatctggaactgactactcgtctcctcgtcctccagctcat
caacaatccccaccaactcggacttatcagccaacatctactcctgcgttccgtggtgga
tcatccaattctcatccacatccatcagccaatgtttatccgtcctcaacacgtggcaac
tattctggaaatatggaatacgctccacgtggcggtcatggatatcatggaccaccacca
ccacaacaaccacatcataaccatcatcatcaacagaagagattcgttcaaggaccacca
ccaccaatggtcgctgttggagttttacctggaaatgttgtcccaccaccacaaatgaca
cgtggaactactcatggaggacacggaaatcatcataatggaggacaacagagaatccga
caaccaacggatgtcgtctattttgatccacaacaacaacagggaaatcgtcaacttcca
cctcgatcgaagaaggttatcccaattgtggatccaaataaggcagatcaaaaataa
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