Caenorhabditis remanei (nematode): GCK72_001870
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Entry
GCK72_001870 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K12830
splicing factor 3B subunit 3
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GCK72_001870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crq03021
]
GCK72_001870
03041 Spliceosome [BR:
crq03041
]
GCK72_001870
03036 Chromosome and associated proteins [BR:
crq03036
]
GCK72_001870
Transcription machinery [BR:
crq03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
GCK72_001870
Spliceosome [BR:
crq03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
GCK72_001870
Complex B
GCK72_001870
Complex C
U2 SnRNP specific factors
GCK72_001870
Chromosome and associated proteins [BR:
crq03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
GCK72_001870
TFTC complex
GCK72_001870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
WDR55
Motif
Other DBs
NCBI-GeneID:
9819222
NCBI-ProteinID:
XP_053591803
UniProt:
A0A6A5HUY5
LinkDB
All DBs
Position
I:complement(9071472..9075627)
Genome browser
AA seq
996 aa
AA seq
DB search
MHLYNLTLQGQTAINQAIQGNFSGTPKSQEIVIGRGSALELLTLDTVTGKIKVMCHQDIF
GIVRSLLAFRLTAGTRDFIAVGSDSGRIVILQYNAEKTCFERLHQETFGKTGCRRIVPGH
YLAGDPRGRALMIGAVERQKLVYIMNRDSEAHLTISSPLEAHKHHTLCYAMVGVDVGFEN
PTFACLEFDYEDSDNDPTGEAAKRTQQTLTFYELDLGLNHVVRKYAEPLNDPGNLLIAVP
GGNDGPSGVIVCCENYLVYKNLGDQPDIRCPIPRRRNELDDADRTMLIIATATHKTRNMF
FFLVQAENGDIFKVTLETDEDLVTEMKLKYFDTVPPANAMCILKAGFLFIAAEFGNHELY
QIASLGEGGDDEFSSAMGFGENDAAFFEPHELRSLIPIDSMDSLSPLTDAVIGDIAREDA
AQLYTLIGRGSRSHMKVLRNGLEISEMAVSDLPGNPNAVWTVKKNIEDQYDSYIVVSFVN
ATLALTIGDTVEEASDSGFLPTTPTIGCSMIGDDSLVQIYSEGIRHIRADKRINEWKVPP
RRQIVKCAVNRRQVAVALSGGELVYFELDLNGTLNEFTERKLFNADIACMTFSEISEGEL
NSRFLALGTVDNAVRIISLDPNDMLMPLSTQNLPCPPESILLIDTPNEDGKGVAAVHLNI
GLQNGCLFRNTVDNVTGAIMDTRTRYLGTRPVKLFKVQCQGRSAILCTSSRSWLLYHFQR
RFHLTPLSYANLEYAASFCSNQCAEGIVAISASTLRIIAAEKLGVAFNVQSFEHKLTPRR
VAVHPTMPCLVVIETDHAAYTEVTKGLKRNQMALDVEAMASDENEAQLAREIATNLREKQ
LDERVYGAPRAGYGKWASAISLVSATTGQKFTHFELPQNENAKCLALVQFSKHPDAVMVL
VGCGVNELLNTQEVNPEDPNYRQVRGCVYTFHLSPSGDRFDFLHRTETPLPVGAIHDFRG
MALVGFGRFLRMYDIGQKKLLAKCENKKFFWVLGNV
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatacaatctgacactgcaaggccaaacggccatcaaccaggctattcaaggc
aacttctctggaactcccaaatcacaggaaattgtcattggacgtgggtcggctctcgaa
ctgctgacacttgacacagttactggaaaaataaaggttatgtgtcatcaagacatattc
ggaatcgttcggtcccttctcgcattccgtttgactgcaggaacccgtgatttcatcgcc
gttggttcagattctggaagaatcgttattttacagtacaacgccgaaaaaacgtgcttt
gaaagacttcatcaggaaacgttcggaaagactggatgtcgtcgcattgttccggggcac
tacctggctggagatccacgtggacgtgctctcatgattggcgcagttgaaagacagaaa
cttgtatacattatgaacagagactcagaagcacatctgacgatctcatctcctttagaa
gctcataaacatcatacactgtgctatgcgatggttggagttgacgttggattcgaaaat
cctacttttgcttgtttggagttcgattatgaagacagtgacaacgatccgactggcgaa
gctgcaaagagaactcaacaaacgctgacattctacgaattggatcttggtctaaaccat
gttgttcgaaagtacgcagaacctctcaatgatccaggaaacttgcttatcgcagttcca
ggtggtaacgatggtccttctggagtcattgtgtgctgtgaaaactatctcgtctataaa
aatctcggagatcaaccggatatcagatgtccaattccgagaagaagaaatgagttggat
gatgccgatcgtacaatgctcattattgccacagctactcacaaaacaagaaacatgttc
ttcttcttggttcaagctgaaaatggagacattttcaaagtaacactggaaactgatgaa
gatttggtaacagaaatgaaactgaaatacttcgatacagtacctccagctaatgcaatg
tgtattcttaaagcgggattcttgttcattgctgctgagtttggaaatcatgaactctat
caaattgccagtcttggggaaggtggtgacgatgaattctcatctgccatgggctttgga
gagaacgatgcagcattcttcgaaccgcacgaattgagatctctgattccaatcgattca
atggatagtttgagtccacttacggatgcagtgattggtgatattgctcgtgaggatgct
gctcaactatacactcttattggtcgtggatcgcgttctcacatgaaagttcttcgtaat
ggacttgaaatctccgaaatggctgtttcagatttgccgggtaatccaaatgctgtatgg
accgttaaaaagaatattgaagatcaatatgattcgtatatcgttgtctctttcgtcaat
gcaactctcgctctcactattggagatactgtcgaagaagcctcagattccggatttttg
ccaacaacgcctactattggttgttctatgatcggagatgattctcttgttcagatctat
tccgaaggaatccgtcatattcgtgctgataaacgtatcaatgaatggaaagtgccgcca
cgtcgtcaaattgttaaatgtgctgttaacagacgccaggttgctgttgcgttgagtggt
ggagaacttgtgtatttcgagttggatttgaacggcacactgaacgaattcactgagaga
aagttgttcaatgctgatatcgcatgcatgacattcagtgaaatctcagaaggagagctc
aactctcgtttcttggctctcggaactgtcgacaatgcagttcgaatcatatctcttgat
ccaaatgatatgttgatgccattaagtacacaaaatctaccatgtccccccgaatccatt
cttctgattgacacacctaatgaggatggtaaaggagtggccgcagttcatttgaatatt
ggattgcagaatggatgtttattccgtaacacagtcgataatgttactggagctattatg
gatacacgtactcgttatctcggtaccagaccagtcaaattgttcaaagttcaatgccaa
ggacgatcagctattctgtgtacctcatctcggtcatggcttctctatcacttccaacgt
cgtttccatctaactccacttagctatgccaatctcgaatatgctgcaagcttctgctct
aatcaatgcgctgaaggaattgtcgcgatttcagctagtactctcagaattattgctgct
gaaaagctcggcgttgcattcaatgtccaatcattcgaacataagctaactcctcgccgt
gtcgcagttcatccaacaatgccgtgtctagttgtgatcgaaactgaccatgctgcttat
acagaagttacaaaaggcttgaaaagaaatcagatggctttggatgtcgaagcaatggca
tcagatgaaaacgaagcacaattagctagagaaatcgctacaaatcttcgagaaaagcaa
ttagatgaaagagtttacggtgcgccgagagctggatatggaaaatgggcatcggcaatt
agtttggtttcggccacaactggacagaaattcacacatttcgagctaccacagaacgag
aatgccaagtgtctcgctcttgttcaattctcaaaacatcctgacgcagtgatggttctt
gttggatgtggtgtgaatgaacttctaaatacgcaagaagtcaatccagaagatccaaat
tatcgacaagtcagaggatgtgtctacactttccatctctcaccatccggtgatcgattc
gatttcttgcatagaacagagactccattgccagttggtgcgattcatgatttccgtgga
atggccctcgttggattcggtcgtttccttcgaatgtacgacattggacagaagaaattg
ttggcgaaatgtgaaaacaagaaatttttctgggttttgggaaacgtgtga
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