Caenorhabditis remanei (nematode): GCK72_002158
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Entry
GCK72_002158 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GCK72_002158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crq03019
]
GCK72_002158
03041 Spliceosome [BR:
crq03041
]
GCK72_002158
Messenger RNA biogenesis [BR:
crq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
GCK72_002158
Spliceosome [BR:
crq03041
]
Complex B
Other components
Prp19-related factors
GCK72_002158
Complex C
GCK72_002158
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_14
HAT_PRP39_C
Suf
TPR_19
TPR_15
TPR_12
TPR_2
TPR_8
ARM_TT21
RPN7
TPR_16
Tcf25
DUF5575_C
Motif
Other DBs
NCBI-GeneID:
9817740
NCBI-ProteinID:
XP_053591931
UniProt:
A0A6A5HQ53
LinkDB
All DBs
Position
I:10090686..10093658
Genome browser
AA seq
866 aa
AA seq
DB search
MTGKENSNVSTSKFNEAPTKSEKSFNVDSMKGILSEDVPFEEDIIRNPTSVNCWQRYIDH
KRQNKSPAKQVFLIYERALAIFERSYKLWYHYLKYRESTIVNKCPTENAWRSLCDTYERC
LMRLHKMPRIWICYCEVMIKRGLITETRRVFDRALRSLPVTQHMRIWPMYIDFLTSHDLP
DTTIRVYRRYLKMNPKVREDYIEYLIERDQIDEAAKELTVLVNQDQNVSEKGRTSHQLWT
QLCDLISKNPVKIFSLNVDAIIRQGIYRYTDQVGFLWCSLADYYIRSAEFERARDVYEEA
IAKVSTVRDFAQVYDAYAAFEEREVSIMMEEVEQSGDPEEEVDLEWMFQRYQSLMERKNE
LMNSVLLRQNPHNVGEWLNRVNIYEGNYNKQVETYKEAVKSVNPKIQVGKIRDLWIGFAK
LYEDNGDLDAARRTFETAVVSQFGGVSELANVWCAYAEMEMKYKRPKAALDLMRRACAVP
RPGDYENMQSVQARVHRSPILWAMYADYEECCGTVESCRKVYDKMIELRVASPQMIMNYA
MFLEENEYFELAFQAYEKGIALFKWPSVFDIWNTYLVKFIKRYGGKKLERARDLFEQCLE
NCPPTHAKYIFLLYAKLEEEHGLARHALSIYNRATSGVDRSDMHLMYNIYIKKVQEMYGI
AQCRPIFERAISELPEDKSRAMSLRYAQLETTVGEIDRARAIYAHAAEISDPKVHVKFWD
TWKTFEVAHGNEATVRDMLRVRRSVEASYNVNVTLTSVQMRVDAERKAQETTSGVVNPMD
SLDQQAHQPVDGGTVTQVSMNKGNISFVRGASKTVQQDTTENPDEIDLDDDEEEDGDEEG
GEMDISTKTVPAQIFGSLKLADESDS
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgaccggcaaagaaaacagcaatgtatctaccagcaagttcaatgaagctccaacaaaa
tcggaaaaatcatttaacgtcgattcgatgaaaggaattttatcagaagatgtgccattt
gaagaggatatcatccgtaatcccacttccgttaattgttggcagagatatatcgatcac
aagcggcaaaacaaatcacctgctaaacaagtgttcttaatttatgagcgtgcactcgca
atttttgaaaggagctacaaactttggtaccattacctcaaatacagggagagcacaata
gtaaataagtgtccaactgaaaacgcgtggagatctctttgcgatacatacgagcgttgc
ctcatgagattgcacaagatgcctagaatatggatttgctactgtgaagtaatgattaaa
cgcggtcttatcaccgaaactcgccgtgtttttgatcgagcacttcgttcacttccggtg
actcaacacatgcgcatttggcctatgtacatcgatttcctcaccagtcacgatcttcca
gataccacaattcgtgtttatagaagatatctcaaaatgaatcccaaagttcgtgaagac
tacatcgagtatcttatcgaacgagatcaaatcgatgaagcagcgaaagagttaacagtt
ctcgtaaatcaggatcaaaacgtttctgaaaaaggacggacttcgcatcaactgtggact
cagctttgtgatctgatctcaaaaaacccagtgaagattttctcattaaacgttgatgcc
atcattcgacaaggaatctatcggtatactgatcaagtaggattcctttggtgttcactt
gctgattattatattcgaagtgccgaatttgaaagagctcgcgatgtttacgaggaagcc
atcgcaaaagtgtctactgttcgtgatttcgcacaagtatatgacgcatatgcagctttt
gaagaaagagaagtatccatcatgatggaagaggttgaacagagtggcgatccggaggaa
gaagtcgatttagagtggatgttccagagatatcaaagtcttatggaacgaaaaaatgaa
ttgatgaacagtgttcttttgcggcagaatccacacaatgttggcgagtggttgaatcgg
gttaatatctatgaaggaaattataacaaacaagtcgaaacatacaaagaagctgtcaaa
tcagtgaacccgaaaattcaagtgggaaagattcgtgatctctggatcggatttgccaag
ttgtacgaagataatggtgatttggatgccgctcgaagaactttcgaaactgcagtcgtt
tctcagttcggaggagtaagtgagctggcaaatgtgtggtgtgcctatgctgaaatggaa
atgaagtataaacgaccgaaagctgctttggacctcatgcgaagagcatgtgctgttccc
agaccaggagattatgaaaacatgcaatcagtacaagcaagagttcatagaagtcctatt
ctctgggccatgtatgctgattatgaagaatgttgtggcactgtggaatcctgtcgaaaa
gtatacgataaaatgattgagttgcgtgttgcttcgccacaaatgatcatgaattatgcc
atgttccttgaagaaaacgaatactttgagttggctttccaagcttatgaaaagggaata
gctttgtttaaatggccaagtgtgttcgacatttggaacacttatcttgtaaagttcata
aaaaggtatggcggaaagaaattggaacgcgcaagagacctattcgaacaatgtctcgaa
aactgccctccaactcatgctaaatacatttttttgctatacgctaaactcgaagaagaa
cacggactggctcgtcatgctctttccatttacaatagagcaacttctggagttgatcgt
tctgacatgcatttgatgtacaacatctacattaaaaaagtccaggaaatgtacggaatc
gcccaatgtcgtcctatattcgaacgagccatctcggagcttccagaagacaaatcacga
gcaatgagtttgagatacgcacaattagaaactaccgttggagaaattgacagagctcga
gctatatatgctcatgctgcagaaatttccgatccaaaagttcatgtcaagttttgggat
acatggaaaacctttgaagttgctcatggaaatgaagcgactgtcagagatatgcttcgt
gtgcgtcgttctgttgaagcgtcttataatgttaatgtaacactcacatccgtgcaaatg
cgtgttgatgctgaacgaaaagcacaggaaacaacaagtggagttgtcaatccaatggac
tcccttgatcaacaagctcaccagccagttgatggtggaactgtcactcaagtatcaatg
aataagggtaatatttcctttgttcgtggagccagcaaaacggtgcaacaagacactacc
gaaaatcccgatgaaattgacttggatgatgatgaggaggaagacggagacgaagaaggt
ggagaaatggacatttctaccaaaactgttccggctcaaattttcggatctttgaaactc
gctgatgaaagcgactcttga
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