Caenorhabditis remanei (nematode): GCK72_002540
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Entry
GCK72_002540 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GCK72_002540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crq03041
]
GCK72_002540
Spliceosome [BR:
crq03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
GCK72_002540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_WDR3_2nd
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
PRP4
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_WDR41
eIF2A
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_NWD2_C
Ge1_WD40
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
9809988
NCBI-ProteinID:
XP_003111908
UniProt:
E3LVK8
LinkDB
All DBs
Position
I:11495688..11497470
Genome browser
AA seq
496 aa
AA seq
DB search
MGEDDKFAVPAPPKQFGSLANAESVNAILNAAQKSQGPTVSLERMEVSNQADSRHDAEML
AEFDRRRRARTLTLPTDDVQVKLKLRALNQPICLFGEDALDRRERLRALLSTMSEDEIAA
VLHTDEHNADKNDEETVTWYHRGPVELRKARVAIADFSLRKAKLRLEKAREDAAQPSHEK
ALARQEAHKWVQQINLHASQVADTRPVAYCEFSADSKHIVTAGWSGSVAVWKRDQCEKEI
KFTGHSAQAGCARFHPGAFVQNDNASLNVVSCSYDGTVLLWSLAQETPIGELEKHPQRVS
KVAFHPNGLHLATACFDSTWRMYDLTTRKELLFQEGHSKSVADVAFHPDGSVALTGGHDC
YGRVWDMRTGRCIMFLDGHTKEIHSVEWMPNGYEMITGSSDNSMKVWDLRMRRNTYTMPA
HTSVVTRVRASSAGQYLVSASFDCTLKMWSTTGWQPLRQLQGHDTRILCVDISPDGQWMC
SSAFDRTFKLWAQSDY
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgggagaagacgacaaatttgcggttccagctcccccgaaacagttcggatcgttggca
aatgcagaaagcgtcaatgctatcttgaacgcagctcaaaaaagtcaaggaccaacagtg
tctctggaaagaatggaagtctcaaatcaagcagattcccgtcatgatgctgagatgctc
gccgagtttgacagaagaagaagggcaaggacactaactctacccacagatgatgttcag
gtgaagctaaaacttcgtgcattaaaccagccgatttgcttgttcggagaagatgcattg
gatagacgagaacgtctccgagctctactttcaacaatgtcggaagatgaaattgctgca
gttttacatactgatgagcataacgcagacaaaaacgatgaagaaacagtcacatggtac
catcgtggaccagttgagcttcgcaaggctcgtgtcgctattgcagatttttcgctgaga
aaagctaaattaagattggaaaaggcccgtgaagatgctgctcagccgtctcacgagaaa
gcgttagctcgacaagaagctcacaaatgggttcaacaaattaatttgcacgcctcacaa
gtcgctgatacacgccctgttgcctattgcgagttttccgcagattctaaacatattgtc
accgctggctggtctggatcagtggctgtctggaaacgagatcaatgcgaaaaagaaatc
aagttcactggtcattcagcacaagctggatgtgctcgtttccatccaggagcttttgtt
cagaacgacaatgcttctttgaatgtggtatcttgttcttacgatggaactgttcttctg
tggtcattggcacaagaaactccgatcggtgagctagaaaaacatccacaaagagtttcg
aaggtagcattccatccaaatggactacatctagcaacagcttgtttcgattcaacttgg
cgtatgtatgatttaacaacgaggaaggagttgttattccaagagggtcattcgaaatca
gtagctgacgtggcatttcatccagatggatctgtagcactgaccggcggtcatgactgt
tatggaagagtatgggatatgcgaactggaagatgtatcatgttccttgatggtcacaca
aaagagattcactctgttgagtggatgccgaatggctacgaaatgataaccggaagctcg
gataactctatgaaagtctgggatctccgaatgcgtcgtaacacttacacaatgcctgct
cacacttcagtcgttacacgtgttcgcgcaagttcagcaggacaatatctcgtttctgct
agtttcgattgcacactaaaaatgtggtcgactactggttggcaacccctcagacaactt
caagggcacgacactcgaattctttgtgttgatatcagtccagatggccaatggatgtgt
tcttcagcgttcgatcgtacattcaagttgtgggctcaatctgattattga
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