KEGG   Caenorhabditis remanei (nematode): GCK72_002540
Entry
GCK72_002540      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:crq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GCK72_002540
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:crq03041]
    GCK72_002540
Spliceosome [BR:crq03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    GCK72_002540
SSDB
Motif
Pfam: WD40_Prp19 WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_CDC20-Fz WD40_WDHD1_1st WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 WDR55 EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_Aladin WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st WDR90_beta-prop_4th PRP4 Beta-prop_TEP1_C ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_DCAF4 NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_IFT122_1st Beta-prop_WDR41 eIF2A Beta-prop_WDR19_1st Beta-prop_SCAP Beta-prop_NWD2_C Ge1_WD40 Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 9809988
NCBI-ProteinID: XP_003111908
UniProt: E3LVK8
LinkDB
Position
I:11495688..11497470
AA seq 496 aa
MGEDDKFAVPAPPKQFGSLANAESVNAILNAAQKSQGPTVSLERMEVSNQADSRHDAEML
AEFDRRRRARTLTLPTDDVQVKLKLRALNQPICLFGEDALDRRERLRALLSTMSEDEIAA
VLHTDEHNADKNDEETVTWYHRGPVELRKARVAIADFSLRKAKLRLEKAREDAAQPSHEK
ALARQEAHKWVQQINLHASQVADTRPVAYCEFSADSKHIVTAGWSGSVAVWKRDQCEKEI
KFTGHSAQAGCARFHPGAFVQNDNASLNVVSCSYDGTVLLWSLAQETPIGELEKHPQRVS
KVAFHPNGLHLATACFDSTWRMYDLTTRKELLFQEGHSKSVADVAFHPDGSVALTGGHDC
YGRVWDMRTGRCIMFLDGHTKEIHSVEWMPNGYEMITGSSDNSMKVWDLRMRRNTYTMPA
HTSVVTRVRASSAGQYLVSASFDCTLKMWSTTGWQPLRQLQGHDTRILCVDISPDGQWMC
SSAFDRTFKLWAQSDY
NT seq 1491 nt   +upstreamnt  +downstreamnt
atgggagaagacgacaaatttgcggttccagctcccccgaaacagttcggatcgttggca
aatgcagaaagcgtcaatgctatcttgaacgcagctcaaaaaagtcaaggaccaacagtg
tctctggaaagaatggaagtctcaaatcaagcagattcccgtcatgatgctgagatgctc
gccgagtttgacagaagaagaagggcaaggacactaactctacccacagatgatgttcag
gtgaagctaaaacttcgtgcattaaaccagccgatttgcttgttcggagaagatgcattg
gatagacgagaacgtctccgagctctactttcaacaatgtcggaagatgaaattgctgca
gttttacatactgatgagcataacgcagacaaaaacgatgaagaaacagtcacatggtac
catcgtggaccagttgagcttcgcaaggctcgtgtcgctattgcagatttttcgctgaga
aaagctaaattaagattggaaaaggcccgtgaagatgctgctcagccgtctcacgagaaa
gcgttagctcgacaagaagctcacaaatgggttcaacaaattaatttgcacgcctcacaa
gtcgctgatacacgccctgttgcctattgcgagttttccgcagattctaaacatattgtc
accgctggctggtctggatcagtggctgtctggaaacgagatcaatgcgaaaaagaaatc
aagttcactggtcattcagcacaagctggatgtgctcgtttccatccaggagcttttgtt
cagaacgacaatgcttctttgaatgtggtatcttgttcttacgatggaactgttcttctg
tggtcattggcacaagaaactccgatcggtgagctagaaaaacatccacaaagagtttcg
aaggtagcattccatccaaatggactacatctagcaacagcttgtttcgattcaacttgg
cgtatgtatgatttaacaacgaggaaggagttgttattccaagagggtcattcgaaatca
gtagctgacgtggcatttcatccagatggatctgtagcactgaccggcggtcatgactgt
tatggaagagtatgggatatgcgaactggaagatgtatcatgttccttgatggtcacaca
aaagagattcactctgttgagtggatgccgaatggctacgaaatgataaccggaagctcg
gataactctatgaaagtctgggatctccgaatgcgtcgtaacacttacacaatgcctgct
cacacttcagtcgttacacgtgttcgcgcaagttcagcaggacaatatctcgtttctgct
agtttcgattgcacactaaaaatgtggtcgactactggttggcaacccctcagacaactt
caagggcacgacactcgaattctttgtgttgatatcagtccagatggccaatggatgtgt
tcttcagcgttcgatcgtacattcaagttgtgggctcaatctgattattga

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