KEGG   Caenorhabditis remanei (nematode): GCK72_002852
Entry
GCK72_002852      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K17908  autophagy-related protein 18
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq04136  Autophagy - other
crq04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:crq00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    GCK72_002852
   04136 Autophagy - other
    GCK72_002852
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:crq04131]
    GCK72_002852
   03029 Mitochondrial biogenesis [BR:crq03029]
    GCK72_002852
Membrane trafficking [BR:crq04131]
 Autophagy
  Autophagosome formation proteins
   Atg18-Atg2 complex
    GCK72_002852
Mitochondrial biogenesis [BR:crq03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    GCK72_002852
SSDB
Motif
Pfam: PROPPIN WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WD40 WD40_Prp19 ANAPC4_WD40 Beta-prop_Vps41 WD40_MABP1-WDR62_2nd Beta-prop_HPS5 WDR55 EIF3I BCAS3_WD40 Beta-prop_RSE1_2nd Beta-prop_WDR90_POC16_2nd PEP5_VPS11_N Beta-prop_NUP159_NUP214 Beta-prop_WDR35_TULP_N Beta-prop_TEP1_2nd Beta-prop_IFT140_1st DUF5711 Beta-prop_EML
Other DBs
NCBI-GeneID: 9806564
NCBI-ProteinID: XP_003099716
UniProt: A0A6A5HSW8 E3MVS0
LinkDB
Position
I:12673500..12676779
AA seq 398 aa
MLLKSWLQMSTPDSYDTPQSINYIGFNQDSKIISVGHKDGFMFYKTADVIENSILECRSQ
SLKDLNLNNCNIIERLFTSSLMVVVSQRDLRVLHVTSNHIICDHRFNKSILSVRLNKMRI
VVCLEDCIYIYNLNDMKMLHMIVDTPMNKLGVVDMTINSGNTFLAYPGSTDTGSVHLFDA
INLSSVNTFVAHEGTLACLKFNQDGNMLATASTKGTVIRVYSVPDGHRLFEFRRGVSRFV
TIHSLCFSSDSKFLASSSNTETVHVFKLEKSGEDDSKPEAPANFAEAAAGWFNTINQTVS
AYMPSQFTQVSELITTERSFATAKLPCAIGSNRVALVEHKNHQFLLVATFDGYVYAYRMH
PEGGELDLIKQHGIGPKARNVPNLDNQSDFQPMLHTSG
NT seq 1197 nt   +upstreamnt  +downstreamnt
atgcttctaaaatcctggttacagatgtcaactcctgactcatatgacacgccccaatcg
atcaactacataggattcaatcaagactctaaaatcatatctgttggccacaaagatggt
ttcatgttttacaaaactgcagatgtcatcgaaaattcaattctcgaatgcagaagccaa
agtctgaaagatttgaatctcaacaattgtaacatcatcgagcggctcttcacctcctct
ctgatggttgtggtctcccagagagatctacgtgtattgcatgtcaccagcaatcacatc
atctgcgatcatcgattcaacaagtcgattctttctgttcgactcaacaaaatgcgaatc
gttgtgtgcctggaggattgtatctacatctacaatctcaacgacatgaaaatgctgcat
atgatcgtggacactccgatgaacaaactcggagtcgtggacatgaccattaactcagga
aacacgtttcttgcttatccaggaagcactgacactggatctgtgcatctcttcgatgcc
atcaatctatcctctgtcaacacgtttgttgctcacgagggaactctggcatgtctcaag
ttcaatcaagatggaaatatgcttgcgactgccagcacaaagggaactgtcattcgagtc
tactctgttccagacggacatcgcctctttgagttccgtcgtggagtctctcgttttgtt
accattcactctctctgcttctcgtctgattccaagtttctcgcttcttcttcgaacact
gagacagttcacgtcttcaaactcgagaaatctggagaagatgattctaaaccagaagct
ccggccaatttcgcagaggctgctgctggatggtttaatacaatcaaccaaactgtctct
gcctacatgccatctcaattcacgcaagtctcggagctaataacaacggagcgtagtttc
gctacagctaagctcccgtgcgccatcggaagcaatcgagttgctcttgttgaacacaaa
aaccatcaattcctgttggttgccactttcgatgggtatgtctacgcgtaccgaatgcat
ccagaaggcggtgaactcgatctcatcaagcaacatggaatcggaccaaaagccagaaac
gttccgaacctggacaatcaaagtgacttccaaccaatgctccataccagcggataa

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