KEGG   Caenorhabditis remanei (nematode): GCK72_003423
Entry
GCK72_003423      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
crq  Caenorhabditis remanei (nematode)
Brite
KEGG Orthology (KO) [BR:crq00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:crq03041]
    GCK72_003423
Spliceosome [BR:crq03041]
 Complex B
  Other components
   Complex B specific factors
    GCK72_003423
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_WDHD1_1st WD40_Prp19 Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 WDR55 EIF3I Beta-prop_TEP1_2nd WDR90_beta-prop_4th WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_CAF1B_HIR1 LisH_TPL WD40_Gbeta Beta-prop_VPS8 Beta-prop_Aladin Beta-prop_RIG_2nd Beta-prop_WDR41 NBCH_WD40 Beta-prop_ACSF4 Beta-prop_Nup120_160 Beta-prop_DCAF4 WD40_MABP1-WDR62_1st Beta-prop_Vps41 Beta-prop_SCAP Beta-prop_TEP1_C Beta-prop_IFT140_1st Beta-prop_EIPR1 Ge1_WD40 Beta-prop_NUP159_NUP214 Beta-prop_IFT122_1st Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 Beta-prop_NWD2_C Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_WDR19_1st WD40_RFWD3 WD40_like Beta-prop_IP5PC_F VPS8_N WDR54 DUF7899 LisH_WDR26 GerA FOP_dimer Beta-prop_WDR75_2nd GndA
Other DBs
NCBI-GeneID: 9806929
NCBI-ProteinID: XP_053592694
UniProt: A0A6A5HX79
LinkDB
Position
I:complement(16234068..16240168)
AA seq 439 aa
MASIEIESSDVIRLIEQFLKESNLHRTLAVLQEETNVSLNTVDSIDAFCNEITSGNWDNV
LKIVQSLKLPAKKLIDLYEHVIIELVEMRELATARLVARQTDPMILLKQVDPDRYARLES
LINRPYFDSQEVYGDISREKRRNVISQTLSSEVHVVAPSRLLSLLGQSLKWQLHQGLLPP
GTAIDLFRGKAAQKEQIEERYPTMMARTIKFSTKSYPESAAFSPDANYLVSGSKDGFIEV
WNYMNGKLRKDLKYQAQDNLMMMDAAVRCMSFSRDSEMLATGSVDGKIKVWKIETGDCLR
RFDRAHTNGVCAVRFSKDNSHVLSGGNDHIVRVHGMKSGKCLKEMRGHTSYVTDVRYSDE
GNHIISCSSDGSIRVWHAKSGECLSTFRVGSDDHPILNVLPIPKSDPPQMVVCNRSNTLY
VVNISGQQKLRLKSLNWRL
NT seq 1320 nt   +upstreamnt  +downstreamnt
atggcatctatcgaaatcgaatcttcagatgtaatccgacttatcgaacaattcctgaaa
gaatccaatttacacagaactttggccgttttacaggaagaaacgaatgtctcattgaac
acagtcgactcaattgacgcgttctgtaatgaaattacgtctggaaattgggataatgtg
ctcaaaattgtgcaatcgttgaagttgccggcgaagaagttgattgatttgtatgagcat
gtaatcatcgagttagtagagatgcgtgaactagcgaccgcccgtctcgtcgcccgtcaa
acggatccaatgatcttattgaaacaagtggatccagatagatatgcccgtctcgaatcc
ctaatcaaccgcccgtattttgatagtcaagaagtttatggagatataagtagagagaag
agaagaaatgtcatctcacagacattgtcttctgaagttcacgtcgtcgcaccgtcacgt
cttctatcacttttgggacaatcgttgaaatggcaattgcatcagggactacttccacct
ggaacagctattgatctatttagggggaaagcggcacagaaagaacaaattgaggagaga
tatccgacgatgatggcaagaaccatcaaattctccactaaatcctacccagaatcggcc
gctttttcaccagatgccaattatctggtatccggatcgaaagacggtttcattgaggtc
tggaattatatgaatggaaaattgagaaaggatttgaagtatcaggctcaagacaaccta
atgatgatggacgccgcagtccgttgtatgtcattcagtcgtgattctgagatgctcgcc
accggatccgtcgacggaaaaatcaaagtttggaagattgagacgggtgactgtcttcga
cgattcgatagagctcatacgaatggagtgtgtgctgtgagattctcaaaagataactca
catgttctctcaggtggaaatgatcatattgtgagagtccacggaatgaagagtggaaaa
tgtctgaaagagatgcgtggacacaccagctacgtcacagatgtccgatattctgacgag
ggaaatcatattatctcatgctcatcggacggctcaatccgtgtgtggcatgcgaaatcc
ggggagtgtctgtcgacgttccgtgttggttccgatgatcatccgattctgaatgttctc
ccaattccgaagagtgatccacctcaaatggtcgtttgtaatcgatcaaatactctttat
gtcgtcaatatttctggacagcaaaaactccgccttaaatctctgaattggagactataa

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