KEGG   Caenorhabditis remanei (nematode): GCK72_004067
Entry
GCK72_004067      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K10842  CDK-activating kinase assembly factor MAT1
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq03022  Basal transcription factors
crq03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:crq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    GCK72_004067
  09124 Replication and repair
   03420 Nucleotide excision repair
    GCK72_004067
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:crq03021]
    GCK72_004067
   03400 DNA repair and recombination proteins [BR:crq03400]
    GCK72_004067
Transcription machinery [BR:crq03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     GCK72_004067
DNA repair and recombination proteins [BR:crq03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     GCK72_004067
SSDB
Motif
Pfam: MAT1 zf-C3HC4_5 CDC45 Rgp1
Other DBs
NCBI-GeneID: 9801207
NCBI-ProteinID: XP_053588634
UniProt: A0A6A5H8E9
LinkDB
Position
II:2403747..2409897
AA seq 206 aa
MSKIRECKKCKSNEYTNKQLVMMINECGHPLCKLDDDQKWIEDQLRDERQMKARMTEHME
TDARDKENATAVTDTRKIMDELRDSNVAAEVILDRERKKQIEKELEEKEEQEKRKRRNKE
MLQTRKRAAENMSFNTVIRIAGRAYLHQPLELVINGPPMPNASQIESMGYLAHIRNATPD
LIAGGYTSALGCSRALFEARIDLFAF
NT seq 621 nt   +upstreamnt  +downstreamnt
atgagcaaaataagagagtgtaaaaagtgcaaatcgaacgagtacaccaacaaacaactg
gtgatgatgatcaacgagtgtggtcatccattgtgcaaacttgacgatgaccagaaatgg
attgaagatcagttgcgtgacgagagacaaatgaaggcgagaatgacggaacatatggag
actgatgcgcgcgacaaagagaacgcgaccgccgttacggacacccgaaagataatggac
gaattgcgtgattcgaacgtcgccgcggaagtgattctggatagagagcggaagaaacag
attgagaaggaattggaagagaaagaagagcaagagaagcggaaaagacggaataaagag
atgttgcagacgaggaaacgagccgccgagaatatgtcattcaatacggtcattcggatc
gctggaagggcttatttgcatcagcccctggaactcgtcatcaacggaccaccaatgccg
aatgcatctcaaatcgaatcgatgggttatctcgctcacattcgcaatgccacaccggat
ctgatcgccggcggttacacatctgcactcggttgttctcgtgcactcttcgaggctcgt
atcgacctgttcgccttctaa

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