Caenorhabditis remanei (nematode): GCK72_004918
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Entry
GCK72_004918 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K14408
cleavage stimulation factor subunit 3
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
GCK72_004918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crq03019
]
GCK72_004918
Messenger RNA biogenesis [BR:
crq03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
GCK72_004918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
Motif
Other DBs
NCBI-GeneID:
9821542
NCBI-ProteinID:
XP_003117432
UniProt:
E3LGD0
LinkDB
All DBs
Position
II:complement(6757962..6760643)
Genome browser
AA seq
737 aa
AA seq
DB search
MSGVNMRNPERRIENNPFDVDAWNLLLREHQSRPIDQEREFYESLVNQFPNSGRYWRAYI
EHELRSKNFENAENLFTRCLVNVLNIDLWKCYIIYVSETKGQLEQYRETMAKTFDFALEK
IGMDVQAHSIYTDYIAFLKKVPAIGQYAENQRITAVRRIYQKALATPMHNLDSIWADYCA
YEKNINMTLAEKLIAERGKDYQNARRVEKELQQVTRGLKRATVSVPPKGTQSETKQVELW
KKLIAWEKTNPLQTEEYGQHARRVVYTYEQSLLSLGYYPDIWYEAAMFLQEASQTLDEKG
DVKLAQALKQETCNLYERAITGLMKESKLIYFAYADFQEEQKKFEAVKDIYNRLLAIEHI
NPTLTYVQLMRFIRRTEGPNNARLVFKRAREDKRTGYQVFVASALMEYNCMKDKEVAIKV
FKLGLKKYENEPGFGLAYADFLSNLNEDNNTRVVFERILTSSKLPSDKSIRIWDRFLDFE
SCVGDLASILKVEKRRKTAYEDAQKDLGMNHSMLVIDRYKFMDLMPCSGEQLKLIGYNAL
KGTESTATQGSSNSGPKPLPTRGPQAASAIMGGAGGHAEMARYGFPRPDITQMIPFKPRV
NCNASFHPVPGGVYPPPPAAAHLLSLLPPPTCFIGPFVNVEALCNLLSQVQLPNMSYSKS
EDNMIGPMMEQDVKKDLYQLLATTSDPSAVVRSSALADLKRKRGDSDDEEDYTHIGATIG
SLGTRDAYKRRMNKKNE
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgtctggggtgaacatgcgcaacccagagcgccgaattgagaacaatccattcgacgtg
gacgcatggaacctattgctccgagagcatcagtctcggccgatcgatcaagaacgtgaa
ttctacgagagtctcgtgaatcagtttccaaattctggaagatattggagagcgtacatc
gagcacgaactccgatcgaaaaactttgaaaacgcggagaatctattcacaagatgtttg
gtcaatgtgctgaatatcgatttgtggaaatgctatataatttatgtatcggagacaaaa
ggacagttagagcagtatagagagacaatggcaaaaacttttgattttgctctagaaaaa
ataggaatggatgttcaggctcactcgatttatacagattatatagcttttttaaagaaa
gtccctgcaattggtcaatatgctgaaaatcagcgaatcactgctgttcgtagaatctat
caaaaagctctagccaccccaatgcataatcttgactccatttgggcggattattgtgcc
tacgaaaagaatattaacatgactctcgctgagaaattgatagctgaacggggaaaagac
tatcaaaatgctcgtcgagtcgagaaagaactacaacaagtgacacgtggattgaaacga
gctacagtttcagtaccaccgaaaggaactcaatctgagacgaaacaggtagaattatgg
aagaaattgatagcttgggagaagacgaatccgttgcaaacggaagaatacgggcaacat
gctagacgagttgtgtacacttacgaacaatcactgctcagtcttggatattatccggat
atttggtatgaagcggcgatgttccttcaggaagcaagtcagactctagatgagaaagga
gatgttaaattggcacaagcattgaagcaagagacttgcaatctctacgaacgcgcgatt
actggtctgatgaaagaatcaaaactaatttattttgcctatgctgacttccaagaagag
cagaagaaattcgaagcagtcaaagatatctacaatcgattactggccatcgaacatatc
aatccaactctcacctatgttcaattaatgagatttattcgacgaactgagggaccaaac
aatgctcgattagtattcaaaagagcacgagaagataaacgaactggttatcaggtgttc
gtggcttctgctctgatggaatataattgtatgaaggataaggaagtggcgataaaagtt
ttcaagttgggattaaagaaatacgaaaatgaaccgggattcgggttggcttacgcggat
tttttgtcgaatttgaatgaggataacaatacgagagtcgtcttcgagaggattttaacg
tcgtcgaagttgccatctgacaagtcaatacggatttgggatcgattcctcgactttgag
agctgtgttggtgacctcgcaagtattctaaaagtagaaaaacgacgaaagactgcatac
gaagacgctcaaaaagatctcggaatgaaccactcgatgcttgttatagatcgatacaag
ttcatggatttgatgccttgcagtggtgaacaactcaagttaatcggctacaatgcactg
aaaggaactgagagcactgcaacccaaggctcctcaaactccggaccgaaaccactgccg
actcgtggaccacaagcagccagtgcaattatgggcggagctggagggcatgcagagatg
gcgagatacggattcccacgaccggatataactcaaatgataccattcaaaccacgtgtc
aattgtaatgcatctttccatccggtacctggaggagtgtatccaccaccaccagcagca
gctcatctgttgtctctcctcccaccaccgacttgtttcattggaccatttgtaaatgtt
gaagcgttgtgtaatttgttgagtcaagtacaacttccgaatatgtcatactcgaaatca
gaggacaatatgattggaccgatgatggagcaagatgtgaagaaggatttgtatcagctg
ttagccacaacttctgatccatcagcggttgtccgctcttcggcgctcgccgatctcaaa
cgaaaacgtggcgactcagacgacgaagaggactacactcatatcggtgccacaatagga
tctctcggaacacgagacgcctataaacggcggatgaacaagaaaaatgaataa
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