Caenorhabditis remanei (nematode): GCK72_004999
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Entry
GCK72_004999 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03013
Nucleocytoplasmic transport
crq03015
mRNA surveillance pathway
crq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GCK72_004999
09122 Translation
03013 Nucleocytoplasmic transport
GCK72_004999
03015 mRNA surveillance pathway
GCK72_004999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crq03019
]
GCK72_004999
03041 Spliceosome [BR:
crq03041
]
GCK72_004999
Enzymes [BR:
crq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GCK72_004999
Messenger RNA biogenesis [BR:
crq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
GCK72_004999
Spliceosome [BR:
crq03041
]
Complex C
Other components
EJC/TREX
GCK72_004999
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
GCK72_004999
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
9822124
NCBI-ProteinID:
XP_003117300
UniProt:
E3LGK6
A0A261AVZ9
LinkDB
All DBs
Position
II:complement(<7056784..>7058580)
Genome browser
AA seq
424 aa
AA seq
DB search
MEEEQLLDYEEEQEEIQEKQEVGGGDAKKTKGTYASIHSSGFRDFLLKPEILRAIGDCGF
EHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTREL
AFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIVVGTPGRMLALARSGKL
KLDKVKYFVLDECDKMIGDADMRRDVQEIVKMTPQQKQVMMFSATLPKELRAVCKRFMQD
PMEVYVDDEAKLTLHGLQQHYVKLKEAEKNRKLLNLLDALEFNQVVIFVKAVKRCEALHQ
LLTEQNFPSIAIHRQMAQEERLSRYQSFKDFQKRILVATDLFGRGMDIERVNIVFNYDMP
EDSDSYLHRVARAGRFGTKGLAITFVSDENDAKTLNSVQDRFDISITELPEKIDVSTYIE
GRTN
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggaacaacttcttgattacgaagaggagcaggaggagattcaggagaagcaa
gaggttggcggaggcgatgccaagaaaaccaagggaacatatgcctcaatccattcgtct
ggattccgtgacttccttctgaagccggaaattctccgtgctatcggagattgcggtttt
gagcatccatcggaagtgcaacatgagtgcattcctcaagccattctcggcatggacgtc
gtttgtcaagcgaagtccggaatgggtaagaccgcagtcttcgttatcaccactcttcag
cagctcgagccagttgacggcgaggtgtcggttgtttgcatgtgccacactcgcgaattg
gccttccaaatctccaaggaatacgagcggttcagcaagtatctcccaggagtgaaggtt
gccgtcttcttcggaggaatggctatcaagaaagacgaggagcgtcttgctaacgactgt
ccacatatcgtcgttggaactccaggaagaatgttggctttggctcgctccggaaagctg
aagcttgacaaagtcaagtatttcgttcttgacgaatgcgacaagatgatcggagatgct
gatatgcgccgtgacgttcaagaaatcgtcaagatgactccacaacaaaagcaagtgatg
atgttctccgccacactgccgaaggagcttcgcgctgtttgcaagcgattcatgcaagac
ccaatggaagtctatgtcgacgatgaagctaagctcactctccacggacttcaacaacac
tacgtcaagctgaaggaagcagagaagaatcgaaagctgctgaatcttctcgatgctctc
gagttcaatcaagtcgtcatcttcgtcaaggccgtgaagcgttgtgaggcccttcatcaa
cttctcacagaacagaacttcccatcgattgctattcatcgtcaaatggctcaagaagag
cgtctgtctcgataccaatcattcaaggacttccaaaagagaatccttgttgcgactgac
ttattcggacgtggaatggatattgagcgtgtgaacatcgtcttcaactacgatatgcca
gaggattctgactcataccttcacagagtcgctcgtgctggacgtttcggaaccaagggt
ttggccatcacattcgtctcggacgagaacgacgccaagactcttaacagcgttcaagat
cgcttcgacatcagcatcacagagctcccagagaaaatcgatgtatctacttacatcgag
ggaagaaccaactga
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