Caenorhabditis remanei (nematode): GCK72_006017
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Entry
GCK72_006017 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GCK72_006017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crq03041
]
GCK72_006017
Enzymes [BR:
crq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GCK72_006017
Spliceosome [BR:
crq03041
]
Complex C
Other components
Step II factors
GCK72_006017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
HA2_N
DEAD
AAA_22
AAA_30
PhoH
AAA_19
Flavi_DEAD
OB_RRP5_4th
GIPC1_GH2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
9800395
NCBI-ProteinID:
XP_003108957
UniProt:
A0A6A5HG88
E3M4L1
LinkDB
All DBs
Position
II:11093891..11098428
Genome browser
AA seq
1208 aa
AA seq
DB search
MDQLEHLSLVSKVLGELENHFGVADKDVAEFVIQMAQENPTFDKFKKELEVQGLSDQFDD
SLTATILRIVQHMTTAKKKTKKSGDFKEDIKDSHKITLISDAKEEIKARLPALAMANTVV
EKEDDGSDLMAELEKLQGRYVEEKSREKESSSKRARSRSQDRDRKRRRSRSRDRSRERDH
RRRSRSREERRHRDGRDRDRDRDDRRNSDRDRGDRRGPDRDKDRRERPGRRDEDNSRKSE
VAEVGKIYDGRVNSIQTFGAFITLEGFRQKQEGLAHISQIRNERVQSVADVLKRGQSVKV
KVNKIENGKISLTMKEVDQSTGEDLNPREADLNPDAIGVRPRTPPASTSSWMNPESSSGP
STSMVGGKTRVRISTPERWELRQMQGAGVLSATDMPDFDEEMGVLKNFDDESDGEDIEIE
LVEEEPDFLRGYGKGGAEIEPVKVVKNPDGSLAQAALMQGALSKERKETKVQAQRERDMD
NQKGFSSNARILDPMSGNQSTAWTADESKDRNSKMKEMPEWLKHVTAGGKATYGKRTNLS
MVEQRESLPIFALKKKLIEAIIDNQILVVVGETGSGKTTQMTQYAIEAGLARRGKIGCTQ
PRRVAAMSVAKRVAEEYGCKLGTDVGYTIRFEDCTSQDTIIKYMTDGMLLRECLIDPDLS
GYSLIMLDEAHERTIHTDVLFGLLKAAARKRPELKLIITSATLDSVKFSEYFLEAPIFTI
PGRTFPVEILYTREPESDYLEAAHITVMQIHLTEPPGDILVFLTGQEEIDTSCEVLYERM
KSMGPDVPELIILPVYGALPSEMQTRIFEPAPAGKRKVVIATNIAETSLTIDGIFYVVDP
GFVKQKIYNPKSGMDSLVVTPISQAAAKQRSGRAGRTGPGKCYRLYTERAFRDEMLPTPV
PEIQRTNLASTLLQLKAMGINNLIDFDFMDAPPLDSMITALNTLHTLSALDGDGLLTKLG
RRMAEFPLEPSLAKLLIMSVDLGCSEEVLTIVAMLNVQNIFYRPKEKQDHADQKKAKFHQ
PEGDHLTLLAVYNSWKNHHFSQPWCFENFIQVRSMKRAQDIRKQLLGIMDRHKLLMRSCG
RDVSQVQKAICSGFFRNAAKRDPQEGYRTLTDGQNVYIHPSSACFQHQPEWVVYHELVMT
TKEYMREVTAIDPKWLVEFAPSFFKIGDSTKLSTFKRNQKIDPLFDKYADPNAWRITRVK
KRIYNPNK
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atggatcagctagagcacctctcattggtaagcaaagtcctcggagaactcgaaaatcat
ttcggagtggctgacaaggatgttgctgagttcgttatacaaatggctcaagaaaatccg
acttttgacaaattcaaaaaagagctggaagttcaaggactatcagatcagtttgacgat
tcacttactgccacaatccttcgtatcgtgcagcatatgacgactgcaaaaaaaaagaca
aaaaagagcggagactttaaggaagatatcaaagattctcataagatcacgttgatttct
gatgcaaaagaagaaattaaagcaaggttgccagcgttggctatggcgaacacagttgtt
gagaaagaagacgatggaagtgatttgatggcagagttagaaaagttgcagggccgatat
gtggaagagaaaagccgcgaaaaggaatctagttcgaaacgggctcgttcaagaagtcag
gatcgtgatcgaaaacggagaagaagccgtagtcgggatagatctcgagaaagagatcat
cgtcggcggagcagaagtagagaagaaaggagacatcgagatgggagagaccgtgacaga
gatcgtgatgatcggaggaatagtgatagagatcggggagatcgtagaggacccgacagg
gataaagaccgacgtgagagaccgggaagacgtgatgaagacaattcaaggaaatcagaa
gtagcagaagtgggaaaaatttatgatggtcgagtgaacagtattcaaacattcggagct
tttattactcttgaaggtttccgccaaaaacaagaaggacttgcccacatttcacaaatt
cgaaatgaacgtgttcaatcagttgcagatgttctcaaaagaggtcaaagtgtgaaagta
aaagtgaataaaattgaaaatggtaaaatttcgctgaccatgaaagaagtggaccaatcg
acaggagaggatttaaatccacgagaagctgatttgaatcctgatgctattggagtgaga
ccacgtacacctccagcatctacctcatcttggatgaatccagagtcatcatcaggtccg
tcaacttcaatggtaggtggaaagacaagagtgagaatctcaacaccagaacgatgggag
ctaagacagatgcagggagctggagtgctgtcagccactgacatgccagattttgatgag
gaaatgggagtgctgaaaaacttcgacgacgaaagcgacggagaagacatcgaaattgaa
ttggtcgaggaagaacctgactttctgcgaggttacggaaaaggtggagccgaaattgag
ccggtcaaagttgtcaaaaatccagatggatcattggctcaagcggctcttatgcaggga
gctttatccaaggaacggaaggaaacgaaagttcaagcacagcgagaacgtgatatggac
aatcaaaaaggatttagttcaaatgcacgtattcttgatcctatgtctgggaatcaatca
actgcttggactgctgatgaatcaaaggatcggaacagtaaaatgaaagagatgccagaa
tggttgaaacatgtgacagctggtggaaaagcaacatatggaaagagaacaaatttgagt
atggttgaacaacgagaaagtctcccgatctttgcgttgaaaaagaaattgattgaagct
atcatagataaccaaatccttgttgttgtcggagagacaggttcaggaaaaacgactcaa
atgacacagtacgcaattgaagcaggacttgcaagacgcggaaaaattggctgtacacag
ccgcgtcgtgttgcggcaatgtcagtggcaaagcgtgtggcagaagaatatggatgcaag
cttggaaccgatgttgggtatacaattcgtttcgaagattgcaccagtcaagatacaatc
atcaagtacatgactgacggaatgcttctcagagaatgccttattgatcctgatctctcc
ggttattcattgattatgctcgatgaagctcacgaacgtactattcatactgatgttctg
tttggtttattgaaagcagctgctagaaaacgtcccgaactcaagttaatcatcactagt
gctacgctggattctgttaaattctcggaatatttcttggaagcccccattttcacaatt
cctggacgaacttttcctgtggagattttgtacacaagagagccggagtccgattatctt
gaagcggcacatatcactgtaatgcaaattcatttaactgagcctcctggtgacatcttg
gtgtttttgactggacaagaagaaattgatacttcatgcgaagtattatatgaacgaatg
aagtcgatgggacctgatgttcccgaactcatcattcttccagtttacggagcccttccc
agtgaaatgcagaccagaatcttcgaaccagcaccagctggaaagcgtaaagttgttatt
gctacaaatattgctgagacgtcgttgacaatcgatggaatcttctacgttgtcgaccca
ggatttgtgaagcaaaaaatttataacccaaagagcggtatggattcactggtagtcacg
ccgatttcccaagctgctgcaaaacaacgttcaggacgtgcaggacgaacaggacctgga
aagtgttatcgtctgtacacagaaagagcattccgagatgaaatgttgccgactcctgtt
ccagaaattcaacgaaccaatctggcgtcaacacttcttcagctcaaagcaatgggaatt
aataatttgatcgatttcgatttcatggatgctccacctcttgattctatgatcacagct
ctcaacactcttcacacattatctgcccttgacggtgatgggctattgactaaacttggt
cgtcgaatggccgaattcccattggaaccatcactcgccaaactgctcatcatgtctgtt
gacctgggttgctcagaagaagttctcacgattgtagcaatgttgaatgtgcaaaatatt
ttctatcgaccgaaagaaaaacaagatcatgctgatcaaaaaaaggcaaaattccaccaa
ccagaaggagatcatttaacacttcttgccgtttacaactcctggaaaaatcatcatttt
tctcagccatggtgtttcgagaatttcatccaagtgagaagtatgaagagagctcaagat
attcggaaacaactacttggaatcatggatcgacacaagcttcttatgcgtagttgtgga
agagatgtatctcaagttcaaaaagcaatttgctcaggatttttccggaatgcagcaaaa
cgagatccacaagaaggatatagaacattgactgatggacaaaatgtctacattcatcca
tcatcagcatgttttcaacatcagcctgaatgggttgtctatcacgaattggttatgaca
acaaaggagtatatgagagaggttactgcaatcgatcccaaatggctcgttgaatttgct
ccttccttcttcaaaatcggtgattccacgaagttgtcaacattcaaacgaaaccagaaa
atcgatccattgttcgacaagtacgcggatccaaacgcttggcgtattactcgtgtcaag
aagagaatctacaatccaaacaaataa
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