KEGG   Caenorhabditis remanei (nematode): GCK72_006461
Entry
GCK72_006461      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq03018  RNA degradation
crq03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:crq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GCK72_006461
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GCK72_006461
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:crq03019]
    GCK72_006461
   03041 Spliceosome [BR:crq03041]
    GCK72_006461
Messenger RNA biogenesis [BR:crq03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     GCK72_006461
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     GCK72_006461
Spliceosome [BR:crq03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    GCK72_006461
SSDB
Motif
Pfam: LSM GRP
Other DBs
NCBI-GeneID: 9815184
NCBI-ProteinID: XP_003113844
UniProt: E3LQG9 A0A260ZJC0
LinkDB
Position
II
AA seq 123 aa
MVLPLSLLKTAQNHPMLVELKNGETYNGHLKACDAWMNIHLVDVIFTSKDGDKFFKMSEA
YVRGSTIKYLRIPETVVDLVKTEVNEVRRQQQREQSRGRGGGRGGRGGHRGGGGNRGGRG
GAR
NT seq 372 nt   +upstreamnt  +downstreamnt
atggtgctacccctttctcttctgaaaactgcccaaaatcacccgatgctcgtcgagttg
aaaaatggagaaacgtacaatggacacttaaaggcttgtgacgcctggatgaatatccat
cttgtcgatgtcatcttcacatcaaaggacggagacaaattcttcaagatgtcagaggct
tacgttcgtggctcaacaatcaaatatctccgaattccagaaaccgtcgtcgatctcgtg
aaaaccgaagtcaacgaagtccgtcgtcaacaacaacgcgaacaatctcgaggacgtggt
ggtggtagaggaggacgtggaggacaccgcggaggtggcggaaaccgaggcggacgtgga
ggtgctcgataa

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