KEGG   Caenorhabditis remanei (nematode): GCK72_006495
Entry
GCK72_006495      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq03020  RNA polymerase
crq03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:crq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    GCK72_006495
  09124 Replication and repair
   03420 Nucleotide excision repair
    GCK72_006495
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:crq03021]
    GCK72_006495
   03400 DNA repair and recombination proteins [BR:crq03400]
    GCK72_006495
Transcription machinery [BR:crq03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     GCK72_006495
DNA repair and recombination proteins [BR:crq03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      GCK72_006495
SSDB
Motif
Pfam: RNA_pol_Rpb4 DUF6377 TetR_C_36
Other DBs
NCBI-GeneID: 9815210
NCBI-ProteinID: XP_003113748
UniProt: E3LQD2
LinkDB
Position
II:12814428..12815016
AA seq 144 aa
MSSGGGNQKSDGQVEEDAAECKFPKEFETTTCDALLTAEVYLLLEHRRQSNESKDEIEEM
SEVFIKTLNYARRMSRFKNRETIRAVRAIFSEKHLHKFEVAQIANLCPENAEEAKALVPS
LENKIEESELEEVLKDLQSKRTFQ
NT seq 435 nt   +upstreamnt  +downstreamnt
atgtcgtccggcggaggaaatcaaaaatctgacggtcaagtcgaagaggacgccgctgaa
tgcaagtttccgaaagaattcgaaacaaccacatgtgatgcactccttactgccgaagtc
tacttgcttctggaacatcgtcgacagtcgaatgagtcaaaagacgaaatcgaagagatg
agcgaggtgttcatcaaaacgctcaattacgctcgacgaatgtctcgattcaaaaatcgt
gaaaccatccgtgcagtccgtgcaattttttctgagaaacatcttcacaaatttgaggtc
gcccaaatcgcaaatctgtgccctgagaacgctgaagaagcaaaagcattggtaccgtct
ctggaaaataaaatagaagaatcagagctcgaagaagttctcaaagatctccagtcaaag
agaacattccaataa

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