KEGG   Caenorhabditis remanei (nematode): GCK72_008325
Entry
GCK72_008325      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K10755  replication factor C subunit 2/4
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq03030  DNA replication
crq03410  Base excision repair
crq03420  Nucleotide excision repair
crq03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:crq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    GCK72_008325
   03410 Base excision repair
    GCK72_008325
   03420 Nucleotide excision repair
    GCK72_008325
   03430 Mismatch repair
    GCK72_008325
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:crq03032]
    GCK72_008325
   03036 Chromosome and associated proteins [BR:crq03036]
    GCK72_008325
   03400 DNA repair and recombination proteins [BR:crq03400]
    GCK72_008325
DNA replication proteins [BR:crq03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    GCK72_008325
  DNA Replication Termination Factors
   ELG1-RFC complex
    GCK72_008325
Chromosome and associated proteins [BR:crq03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    GCK72_008325
DNA repair and recombination proteins [BR:crq03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     GCK72_008325
  Check point factors
   HRAD17(Rad24)-RFC complex
    GCK72_008325
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_16 AAA_14 AAA_22 Rad17 RuvB_N AAA_assoc_2 Mg_chelatase RCF1-5-like_lid nSTAND3 NTPase_1 RNA_helicase Viral_helicase1 AAA_28 AAA_5 AAA_24 AAA_19 AAA_18 AAA_11 AAA_33 AAA_3 DNAX_ATPase_lid IstB_IS21 MeaB AAA_30 AAA_25 MipZ AAA_2 ABC_tran TsaE DUF815
Other DBs
NCBI-GeneID: 9809444
NCBI-ProteinID: XP_003104887
UniProt: E3MFV2
LinkDB
Position
III:852795..856232
AA seq 329 aa
MSKHQKHELAPWVEKYRPQVLSDIVGNENMVSRLEVIAKEGNVPNIILSGPPGIGKTTSV
WALARELLGDKVKEAVLELNASDERGIDVVRNRIKTFAQTKVTLPEGRHKIIILDEADSM
TDGAQQALRRTMELYSKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVELLYRVKEVA
KAESVNYDDGGLEAILFTAQGDMRQALNNLQATVNAYERVNKENVLKVCDEPHPDLMIKM
LLYCTEKKFFEAAKIIHEFHRLGFSSDDILSTLFRVVKTVELSKNVSEQLRMQYIKEIGV
CHMRVVQGLTSKLQLSRLVADLCRVSVDA
NT seq 990 nt   +upstreamnt  +downstreamnt
atgtcaaaacaccaaaaacacgaattagcgccctgggttgagaaatatcgtccacaagtc
ctctcggacattgtcggcaacgaaaatatggttagccgactggaagtgatcgccaaagaa
ggaaatgttccgaatatcattctatcgggaccgccgggaatcggaaaaacgacgtcggtg
tgggcgctggcgagagaattgttgggtgataaggtgaaggaggcggtgctcgagttgaac
gcttctgatgagagaggaatcgacgtcgtcagaaatcgcatcaaaacgttcgctcagacg
aaagttacacttccagagggtcgacacaaaattattattctcgatgaggccgattcgatg
acggacggtgctcagcaggctctccggcgtactatggaactgtattcgaagacgactcgc
ttcgcgttggcttgtaatcaatcggagaagattattgaaccaattcaatcgcgttgcgcc
cttctccgctacacgaagctctccccagtggagcttctctatcgagtcaaagaagtggcg
aaggcggagagcgtgaactacgacgacggtggtctcgaagcgattctattcacagcacaa
ggcgatatgagacaagcgttgaataaccttcaggcgacagtgaatgcatacgaacgagtg
aataaggagaacgtgttgaaagtttgcgatgagccacatccggatctcatgattaagatg
ttgttgtactgtacggagaaaaaattcttcgaggcggcgaaaattattcacgaatttcat
cgattgggattctcgtcagatgatattctgtccactttgtttcgcgttgtcaagacggtc
gagttgtcgaaaaatgtctctgagcagttgagaatgcagtatattaaggaaatcggcgtg
tgtcacatgcgagtcgtgcaaggactcacatcgaaacttcagctctcgcgcctcgtcgcc
gatttgtgtcgtgtttcagtcgatgcttga

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