Caenorhabditis remanei (nematode): GCK72_009039
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Entry
GCK72_009039 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
GCK72_009039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
crq03000
]
GCK72_009039
03021 Transcription machinery [BR:
crq03021
]
GCK72_009039
Transcription factors [BR:
crq03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
GCK72_009039
Transcription machinery [BR:
crq03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
GCK72_009039
RNA polymerase III system
TFIIIB
GCK72_009039
RNA polymerase I system
SL1/TIF-1B
GCK72_009039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TBP
DUF3378
Hexapep
Motif
Other DBs
NCBI-GeneID:
9808089
NCBI-ProteinID:
XP_003095891
UniProt:
A0A6A5H197
E3N6Q2
LinkDB
All DBs
Position
III:complement(<4369745..>4374065)
Genome browser
AA seq
338 aa
AA seq
DB search
MNMNSPASRSMLGGETPAHGGPSSVLGGPSSILTGHGPNSVMGPNSILGPGSMVNPQSIQ
PMQSHQMHSLQGSSMQMHSHLANSNLNLNINPASVGPDRNPGSVMHHSMDINPPSVAFQN
LAIPMTPIAYNNFERDSLIHPPASNIAATMVPATPASQLDIPMPALQNIVSTVNLGVPLD
LKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEASRLAARKYAR
IVQKLGFQAKFTEFMVQNMVGSCDVRFPIQLEGLCITHAQFSTYEPELFPGLIYRMVKPR
VVLLIFVSGKVVITGAKTKKDIDDAFGQIYPILKGFKK
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgaatatgaacagtccggcgagtcgttcaatgcttggcggtgagacccctgctcacggt
ggtcccagttcggttctcggaggaccgtcgtcgattctaacaggtcacggaccgaattca
gtgatgggacccaattcgattctcggtcctggaagtatggttaatccacaatcgattcaa
ccgatgcagtcgcatcagatgcatagtctccaaggctcctcaatgcaaatgcactctcat
ctcgccaattccaatctgaatctcaacataaaccccgcctccgtgggaccagaccgtaat
ccgggatcagtaatgcatcacagtatggatatcaacccaccgtcagtcgcctttcaaaat
ctggccattccaatgacaccaatcgcctataataacttcgagagggactctctgatccat
ccaccagccagtaacatcgccgccacaatggttccagccactccagcgagtcaactcgac
atacccatgccggctcttcagaatattgtttcaactgtcaatttgggagtcccattggat
ctgaaaaagattgctttgcacgccagaaacgccgaatacaatccgaaacgtttcgcggcg
gttatcatgagaattcgtgagccgagaactactgctctcatcttttcaagtggtaaaatg
gtgtgcactggagcgaaatcagaggaggctagtcgacttgctgctcgaaaatatgcgaga
attgtacaaaaattgggattccaggcgaaattcactgagtttatggtccaaaacatggtc
ggctcatgcgatgtccgtttcccgattcaacttgaaggattatgcattactcacgctcag
ttcagtacctatgagcccgaactgtttcccggattgatttatcgaatggttaagccgaga
gttgtgctgctgatttttgtgtcgggaaaggttgttatcactggagccaaaacgaagaag
gacattgacgacgcgttcgggcaaatctatcctatattgaagggattcaagaaataa
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