Caenorhabditis remanei (nematode): GCK72_009225
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Entry
GCK72_009225 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
crq
Caenorhabditis remanei (nematode)
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
crq03009
]
GCK72_009225
Enzymes [BR:
crq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GCK72_009225
Ribosome biogenesis [BR:
crq03009
]
Eukaryotic type
90S particles
Helicases
GCK72_009225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHX37_C
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
HA2_N
AAA_19
ATPase
ResIII
AAA_30
nSTAND3
Motif
Other DBs
NCBI-GeneID:
9827514
NCBI-ProteinID:
XP_003095809
UniProt:
A0A6A5H3B8
E3N712
LinkDB
All DBs
Position
III:complement(5460668..5469533)
Genome browser
AA seq
1146 aa
AA seq
DB search
MGKRKTKHDDAADEYDANELMIVPGEKRKKIEKTGEKSATGGKKNRNFTKEKEEAKLTKQ
AKRKLAAVHARKALKQTQEELFAGLAECQLDPSKLNQLTSSTKISRETEKKPNFPEKLKV
FSGKAKSEEKRTQQNYYPTDDESTDSEEEEDSEDVTTPEVAISEVKVEPIDLDDEEDVQV
TSEVKKTSSDVVVKREDDEESDNEDILALPTTTVINRKKVLVERSEDIQKSRAELPIFAE
EMRIVEAINENLVTVVCGETGSGKTTQIPQFLYEAGYASEGELIGITEPRRVAAIAMAQR
VGIELGKPENVSYQIRYEGTRSDDTNILFMTDGVLMKEMEQDVMLKKYSVILIDEAHERS
MYSDVLIGMLSRIVPLRAKTARPLRLVIMSATLRLDDFTHKKLFPLLTPKVIKVDARQFP
VTVHFEKRTPDDYISSAFRKTCRIHETLPPGAILVFVTGQNEVRQLIAKLKKRYPVVYET
DKNGQVLVKGTKEWKEKKAEAAKNIKLEDFKEETPEKDELDTDDVLDADDINERGAAEAF
DDYEELENGDGDLNDGAVENTIGAPPANCEPLYCLPLYSLLSMGKQRRVFDETPAGMRLC
VISTNVAETSLTIPGVKYVIDGGFEKRRLYDSITGVSRFAVCRISQASADQRAGRAGRIS
AGHAYRLYSSAVYQDCVKFADPEILSKPADQLVLHLKSMNIVKVVNFPFPSAPDEQMLEA
AEKRLCRLGALSETTVNGKTVARITKLGKTLAVFPLAPSYAKFIAMADQHDLMNHAILLI
SLLSVREPLIPVSSLRGATPEETKELMKNVLKERRRWCTQTGARRLGDLKVLMHAATVAE
SVKYNARECEKVGLRVKALVEARKLRQQLTNIVNASCKKEQVAMLDAHLPPPTEQQSQLL
RQMVVASFSDRLARRVDRSVGQEEVQKGAYETTLITEHVFIDPCSVLFTEEPEFVIYQEL
VQVNEKKLMTSVCAVDKEWISRLAESYCKFGESSDKNLEPIYDGVKDAVCKNVKVTFGPL
DWKLPNENRKVPHDIMQYRYFALFLLDGQVFEKLKEFTPKLLAPPTTMVKSWAKLQKRTE
MLLNKLVDKEVTNRATLKEQWLKNENWLLEEYLEWVPESLHQSISLMWPPLEEDEKTAKM
GRNKKY
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaacgaaaaacaaagcatgacgatgcagcagacgaatatgacgccaatgagctc
atgattgtgccaggagaaaaaagaaagaaaattgagaaaaccggagaaaaatcagcgact
ggtggaaaaaagaatcgaaatttcacaaaagaaaaggaagaagcgaaattgacgaagcag
gcgaagagaaaattggcggcggttcacgcgagaaaagctttgaaacagactcaagaagaa
ttgttcgccgggctggccgaatgccaattggatccatcaaagctgaatcaattgacttca
agcacaaagatatcgagagaaacggaaaaaaagccaaacttccctgaaaagctgaaagtg
ttctccggaaaagcgaaaagtgaagagaagcgaacacaacagaattattatccaactgac
gatgaatccactgattctgaagaagaagaggattcagaagacgtcacaactccagaagtc
gcaatttcagaagtgaaagttgaaccaatcgatttggacgatgaagaagacgttcaagtg
acttctgaagtcaagaagacgtcgtcagatgtagttgtgaagagagaagatgatgaggag
tcagataatgaggatattcttgcgctcccaacaactacagtaatcaaccgaaagaaagtt
ctcgtcgagagaagtgaggatattcagaaatcccgtgcagagctgccgatttttgctgaa
gaaatgcggattgtcgaggcgattaatgagaatttggtgacagtagtgtgcggagaaaca
ggatctggaaaaacgactcaaatccctcaattcttgtatgaagcaggatatgcatcagaa
ggagaactcatcggaatcactgaaccaagacgagtcgccgcgattgcaatggctcaaaga
gttggaattgaattgggaaaaccagagaatgtatcgtatcagattagatatgagggaact
cgatccgatgatactaatattctttttatgacagacggagtattgatgaaggaaatggaa
caggatgttatgttgaaaaaatactctgtaattctcatcgacgaagcccacgaacgatca
atgtacagtgatgttctcatcggaatgctctccagaattgttccacttcgcgccaaaact
gcacgtccgttgagattggttatcatgtctgccacgttgagattagacgatttcacgcat
aaaaaattgttccctctcctcacaccaaaagtgatcaaagtagacgcccgtcagttccca
gtgactgtccatttcgagaaacgaacacctgatgactatatctcatcggcattccgtaaa
acatgtcgtatccatgaaacacttcctcccggagcaattcttgtctttgtcaccggacaa
aacgaggttcgacaactgattgcgaaactgaaaaagcggtatccggtggtttatgaaacg
gataagaatggacaagtgttggtgaaaggaacgaaagaatggaaggagaagaaggcggag
gcggcgaagaatatcaagttggaagactttaaggaagaaacaccagaaaaagatgaattg
gatacagatgatgttctcgatgcagatgatattaatgagcgtggcgccgccgaagcgttc
gatgactacgaagaattagagaatggagatggagacttgaatgatggagcagttgaaaac
acaattggagctccaccagccaactgtgagcctctctactgtcttcctctctattcgctt
ctctcaatgggaaaacaacgaagagtgtttgatgagacgcctgctggaatgcgtctatgt
gtcatttcgacgaatgtcgcagagacttcactcactattcctggggtgaaatacgtaatc
gacggtggattcgagaagcgacgtctctatgactcgatcaccggtgtctcccgtttcgcc
gtgtgccgtatctctcaagcatccgccgatcaacgtgccggacgtgctggaagaatttca
gctggacatgcctatcgtctatactcatcagctgtatatcaagattgtgtgaagttcgct
gatcctgagattctatcgaaacccgccgatcagctagtccttcatctgaagtctatgaac
atcgttaaagtcgtcaactttccgtttccatcggctccagatgagcaaatgttggaagcg
gctgaaaagagattgtgtagacttggtgcactttcggagactacggtcaatggaaagact
gtcgccagaattacgaaattggggaaaacgttggcagtgtttccattggctccgtcatat
gcaaagtttattgcaatggctgatcaacatgatttgatgaatcacgcgattcttttgatt
tctttgttgtcagtccgtgaaccactgattcctgtgtcttctctccgtggtgcgacacca
gaagagacgaaagaattgatgaagaatgtgttgaaagagagacgaagatggtgtacacag
acaggagcaagacgtctgggagatctgaaagtgttgatgcatgcggctacggtagcagag
agtgtcaagtacaacgcccgcgaatgcgagaaagttggtctccgagtgaaagcactcgtt
gaagcacggaaactacgtcaacaacttacaaatatcgtcaatgcatcgtgtaagaaagag
caagtcgccatgttggatgcacatcttccaccgccgacggagcaacagtcacagttgttg
agacaaatggttgttgcaagtttctcggaccgtctcgcccgtcgtgtcgaccgttcagtt
ggacaagaagaagtacaaaaaggggcttatgagacaactctcatcacagaacacgtcttc
attgatccatgttccgtcctcttcacagaagaaccagaatttgtgatttatcaagaatta
gttcaagtgaatgagaagaagttgatgacatctgtgtgtgcagtggataaagaatggata
tctcgattggcagagtcatattgcaaattcggagaatcgtcggataagaatctggagccg
atttacgacggtgtgaaggatgcggtgtgcaagaatgtgaaagtgacatttggaccattg
gattggaaacttccgaatgaaaatcgaaaagtccctcatgacattatgcaatatcgatat
tttgcactgtttctgttggatggacaagttttcgaaaagttgaaagaattcacaccgaaa
cttctggctccgcccactacaatggtgaagtcatgggcgaaattgcagaagagaacggag
atgttgttgaataagttggtcgataaggaggtgacaaatcgtgcgacactcaaagaacaa
tggctgaaaaatgagaattggctattggaagagtatctcgaatgggttcccgaatcactt
catcaatcgatttctctcatgtggccaccattggaagaggatgaaaagacagccaaaatg
ggacggaataagaaatattag
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