KEGG   Caenorhabditis remanei (nematode): GCK72_009599
Entry
GCK72_009599      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq03022  Basal transcription factors
crq03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:crq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    GCK72_009599
  09124 Replication and repair
   03420 Nucleotide excision repair
    GCK72_009599
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:crq03021]
    GCK72_009599
   03400 DNA repair and recombination proteins [BR:crq03400]
    GCK72_009599
Transcription machinery [BR:crq03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     GCK72_009599
DNA repair and recombination proteins [BR:crq03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     GCK72_009599
SSDB
Motif
Pfam: Tfb4
Other DBs
NCBI-GeneID: 9814917
NCBI-ProteinID: XP_053587028
UniProt: A0A6A5H4A6
LinkDB
Position
III:complement(6924773..6925969)
AA seq 296 aa
MSTLSVLIEASSCSWGKLASQHGDRTIGIILRSIVSFCNAHLGQSASNQLLVFAYGRNES
KNMIYSSARSDDRNASFIVVDRLKDLLTNDSGNSDATIGAPLGPALAHAFCHMKKDSRIT
TADPCDDSLGPAATSEQSESSTEKVTNRAVVISMSPIMGSEHGSLMNLFFSAAKQSICVD
VVSMGDDFTGGILQQAADITGGSFLHAQKPPALLKILMTNMLTDPSYRTAFSKLSHSSVD
YRASCACHHKLVSSGWVCSVCLSVLCQYTPICKVCRAAFTITNIPKKPNRKRTLRS
NT seq 891 nt   +upstreamnt  +downstreamnt
atgagcacattatctgtattgatcgaagcatcgtcttgttcttgggggaaactagctagt
cagcatggtgatagaacaattggaataatccttcgttctattgtttcattctgcaatgca
catttgggtcaatccgcatctaatcaacttctcgttttcgcatatgggcggaatgaatcg
aaaaacatgatatattcatcggccagatctgatgataggaacgcatccttcattgttgtt
gatagattgaaagacttattaacaaatgattccggaaactctgatgcaacgataggagct
cctcttggacctgcattggctcacgctttctgtcacatgaagaaagacagtagaataaca
actgcggatccatgtgacgattctcttggaccagctgctacttccgaacaatcagaatcc
tctacagagaaagtgacgaatcgagcagttgtgatctctatgtcaccaataatgggaagt
gaacatggctcactgatgaatctgttcttttccgctgccaaacagtccatatgtgtagac
gttgtttcaatgggagacgacttcactggcggaattcttcaacaagctgccgatatcact
ggtggctcgtttcttcatgcccaaaaaccaccagctcttttaaaaatactaatgactaac
atgctcactgatccatcttatcgtactgctttctcaaagctatcccacagttctgtcgat
taccgagcgtcttgtgcctgccatcacaaacttgtctcatccggatgggtttgctctgtc
tgtctatccgtcctctgccaatatactccaatctgtaaagtatgccgagcagctttcacg
atcacaaatatcccgaagaagcctaacagaaagcgtacactcagatcttaa

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