Caenorhabditis remanei (nematode): GCK72_009623
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Entry
GCK72_009623 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
crq
Caenorhabditis remanei (nematode)
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crq03019
]
GCK72_009623
03041 Spliceosome [BR:
crq03041
]
GCK72_009623
03036 Chromosome and associated proteins [BR:
crq03036
]
GCK72_009623
Enzymes [BR:
crq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GCK72_009623
Messenger RNA biogenesis [BR:
crq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
GCK72_009623
mRNA cycle factors
Common to processing body (P body) and stress granule
GCK72_009623
Spliceosome [BR:
crq03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
GCK72_009623
Chromosome and associated proteins [BR:
crq03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
GCK72_009623
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Utp25_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
9818484
NCBI-ProteinID:
XP_003113328
UniProt:
E3LRW0
LinkDB
All DBs
Position
III:complement(7008863..7011274)
Genome browser
AA seq
698 aa
AA seq
DB search
MENNQSNNGSSGNAALNKGGRYVPPHLRGGDGSSATSGGDERRGGSSGGFRRGGGNSGGY
DRGYNDNRGGGSYGGGNRGSDDRGYNNSGGNRGYSNRGESNRGDSNRGDSSRGGDRGGYN
RQERGDGGSNFNRGFNNRDSGYDNRGSGRSYNSDRRDNGGDSQNTRWNNLDAPSRNERGT
SKWENRGPRDERTEQELFSGQLSGINFDKYEEIPVEATGDDVPQPIGLFSDLSLHEWIED
NIKTAGYDRPTPVQKYSIPALQSGRDLMSCAQTGSGKTAAFLVPLVNSILQDGPDAVHRS
VTSSGGRKKQYPSALVLSPTRELSLQIYNESRKFAYRTPITSALLYGGRENYKDQIHKLR
LGCHILIATPGRLIDVMDQGLIGLEGCRYLVLDEADRMLDMGFEPQIRQIVEFNRMPPKE
ERVTAMFSATFPKEIQLLAQDFLKPNYVFLAVGRVGSTSENIMQKIVWVEEDEKRSYLMD
LLDATGDSSLTLVFVETKRGASDLAYYLSRQNYQVVTIHGDLKQFEREKHLDLFRTGTAP
ILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKNRNIA
RELMDLIVEANQELPDWLEGMSGDMRSGGGYRGRGGRGNGQRFGGRDHRYQNGGGNNGGG
SGGFGGGQRSGGGGGGFQSSGGRQQQTQRAQPQQDWWS
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataaccaatcgaacaatggaagcagtggaaatgctgctctaaacaaaggagga
cgttacgtgccaccgcatcttcgcggaggagatgggtcgagtgcaacatcaggaggcgat
gaacgccgcggtggtagcagcggcggtttccgccgtggaggcggaaacagtggaggatac
gatcgtggatacaacgataaccgtggaggtggaagttatggcggagggaaccgtggttct
gacgatcgtggttacaacaacagtggtggaaaccgtgggtacagtaaccgcggtgaaagc
aaccgaggcgacagcaaccgtggagacagcagtcgcggaggagaccgtggcgggtacaac
cgtcaggaaagaggagatggagggtcaaacttcaatcgtggatttaacaatcgtgatagt
ggatacgataacagaggttcaggccggtcatacaacagcgatcgtcgtgacaacggagga
gattcccaaaacactcgctggaataatctcgatgctcctagcagaaatgaacgcggaaca
tcgaaatgggaaaaccgtgggccaagagacgaacgcaccgagcaggaacttttctccggg
cagctctccggaatcaacttcgacaaatacgaagagattccagtggaagctacaggagac
gacgtcccacaacccatcggtctcttttctgatctcagtcttcacgaatggatcgaagac
aatatcaaaactgccggatacgatagaccaacaccagtgcaaaaatactctattccagct
ctacagagtgggcgtgacttgatgtcatgtgctcaaactggatctggaaagactgcagct
ttccttgtaccacttgtcaattctattctgcaagatgggccagatgccgtgcatcgttcc
gttaccagttctggaggaagaaagaagcagtatccaagcgcactggttctttcaccaact
cgtgagctgtctcttcaaatttacaacgagtctcgtaaatttgcataccgcactccaatc
acgtcagcacttctttatggaggacgtgaaaactacaaagatcagattcacaagttgaga
ttgggttgtcatattctcattgcaactcctggtcgtttaatcgatgtgatggatcaaggt
cttatcgggcttgaaggatgccgttacttggttctcgatgaggcagatcgtatgttggac
atgggtttcgaaccacagatcaggcaaatcgtcgagttcaaccgcatgccaccaaaggaa
gagcgtgtcacagcaatgttctctgctactttcccaaaagaaattcaacttcttgcacaa
gattttttgaagcccaactacgtgtttttggctgttggaagagttggatctacctcagaa
aacattatgcaaaaaatagtttgggttgaggaagatgagaagcggtcttatttgatggat
cttcttgatgccactggtgatagttctttgactcttgtttttgttgaaaccaaacgagga
gcttccgatttggcatactatctgagtcgtcagaactaccaagtagtgactattcacgga
gatttgaagcagttcgaaagagagaaacatctcgatttattcagaacggggactgcccca
attcttgttgccactgccgttgctgctcgtggtctcgatattccaaatgtgaaacatgtt
attaactacgatcttccatcggatgttgatgaatatgttcatcgcatcggacgtactggt
cgtgtcggaaacgttggactggctacttccttcttcaacgacaaaaatcggaacatcgcc
cgtgagctgatggatctgattgttgaagcgaaccaagaactccccgattggctcgaagga
atgtctggagacatgagaagcggaggaggatatcgtggccgtggtggacgtggaaacgga
caacgtttcggaggacgcgatcatcgttatcaaaacggtggcggcaacaatggaggtgga
agcggaggattcggtggtggacagcgctccggaggaggtggtggaggattccaatcaagc
ggaggacgtcagcaacagacacagcgtgctcagccgcagcaagattggtggagttaa
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