Caenorhabditis remanei (nematode): GCK72_009673
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Entry
GCK72_009673 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
GCK72_009673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crq03019
]
GCK72_009673
Enzymes [BR:
crq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
GCK72_009673
Messenger RNA biogenesis [BR:
crq03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
GCK72_009673
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
CbiA
AAA_16
AAA_24
nSTAND3
Motif
Other DBs
NCBI-GeneID:
9814532
NCBI-ProteinID:
XP_003113365
UniProt:
A0A6A5H2J3
E3LTC5
LinkDB
All DBs
Position
III:7180135..7181912
Genome browser
AA seq
428 aa
AA seq
DB search
MSEEQVQEFKLKENCELRFAAGEDSDVCLELVNGYAEIFGTQLILNKKYIFPAKSRVAVF
TFTSATVELVGATESAYVAETTPMIIYLNIHAAMEEVRKKREEQAFNTSNKPKGPRLLLV
GPTDVGKSTVSRILCNYSVRQGRSPIFVELDVGQNNISVPGTVAAVLVQKTADVVDSFER
NSPLVYNFGHTSPSKNLSLYEALFKQLASTINSQIQENDEAKIGGMIINTCGWVDGEGYK
CIVKAASAFEVDVVIVLDHERLYSDLSKELPEFVRLTHVPKSGGVEQRTTQIRAKMRGEN
VHRYFYGTRSNNLYPFTFDVPFDDVTLCKVGAEQLPDSCLPFGMEVENHETKVVVMEPSV
DIKHHLFAFSRSQKPDETVLKEAVHGFCLVTEVDMEKRTMTLLCPQNTIPSKTLVYSEVT
HLDDQIKR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaggaacaagttcaagaattcaaattgaaagaaaattgtgagctgaggtttgcg
gctggtgaagattctgatgtttgcttggagcttgtaaatggatatgcggaaattttcggc
acgcaactgatactgaacaaaaaatacatcttcccagccaagtcacgtgtggcagttttc
acattcacaagtgctacagtagaattggttggtgctactgaaagtgcatacgtggcagag
actactccgatgattatctatttgaatatacacgctgctatggaagaagttcgaaagaaa
cgagaagagcaggcatttaatacttcaaataaaccaaaaggtcccaggttgttgttagtt
ggaccaacggatgttggaaaaagtacagtttcacgtatactgtgcaattactctgttcgt
caaggacgtagtccgattttcgttgaacttgatgttggtcaaaataatatatcagtacca
ggaacggttgcagctgttttggtacagaaaaccgctgacgttgtggacagtttcgaaaga
aattctccgttagtttataattttggccacacatcaccgtctaaaaatttgtctctctac
gaagcactttttaagcaattggcatcaactattaattctcagatccaagagaacgatgaa
gcgaagatcggtggaatgataattaatacttgtggatgggttgatggagaaggttataag
tgcatcgtgaaagcagcatcggcttttgaagtggatgtcgtaatcgttcttgatcatgag
aggctttacagcgatttgagtaaagaattgcctgaatttgttcgattgacacacgttccg
aaatctggaggagttgaacagagaacaacccaaattcgggcgaagatgagaggagaaaac
gtccaccgatatttctatggaactcgttctaacaatctctacccattcacttttgacgtc
ccatttgatgacgtcacactgtgcaaagttggtgccgagcagcttcccgattcgtgtttg
ccttttggtatggaagtagagaatcatgagacaaaagtggttgttatggagccatcagtt
gacatcaagcatcatctgttcgctttctcgcgtagtcagaaacccgatgaaacagtactc
aaagaagcggttcatggattctgtcttgttaccgaggtcgacatggaaaagcgaacgatg
actcttttgtgtccccagaatacgatcccgtcgaagacgctcgtctactcggaagttact
catctcgatgatcaaatcaagcgttaa
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