Caenorhabditis remanei (nematode): GCK72_009913
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Entry
GCK72_009913 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
GCK72_009913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crq03021
]
GCK72_009913
03019 Messenger RNA biogenesis [BR:
crq03019
]
GCK72_009913
Transcription machinery [BR:
crq03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
GCK72_009913
Messenger RNA biogenesis [BR:
crq03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
GCK72_009913
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Pcf11_C
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
9806430
NCBI-ProteinID:
XP_053587172
UniProt:
A0A6A5H379
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All DBs
Position
III:8104083..8107360
Genome browser
AA seq
820 aa
AA seq
DB search
MESIEAAARDYRETLAELKNNNKTQINLLTILADDFKDASAQIVDVIEMHLNTCSPSQKL
PVMYVCDSILKNVGKPNDYDTLFARKIINMFEHVFRQGSEATRAALYKLRVTWGSTGLFL
PSKLYGLDIKINKLDSAWPISNPNTGRALRHDAQVMTSQNRPPSALTNSAPNPPTRVFVN
PKFIDANGPANSTAKKIVEKTKSTTSTPVKEKQIKKEPKQDPLDKLLPSTSSGSAKSSVS
SPAGSKRKSTPIEHPHAPNRKKNQPVQSLDEDLRTINLTNNKVAQPQDQDFRPKTLKPTS
VVGSHAFAAGTVPPPVPITQPLAANHFIPLPPTPGPVTPFHHIPQQLPPQPPVQTARMGG
QFIHNSPPQDPAPMAPPMQVVPPPHHQQQAQQKNVYASEQTKLDVPANNRIFVDGKAYEV
MFVDDTAVIERAGAPHRIYFAGTPRNLIIDGTPHLIPFDKPVQVDILGAKHVVKFGAPSR
ELYIGGHPFKGQFGGPPIIATINGRRHEIRLTGSAPEVRIEPEPAYHLTHFLHKMREEKK
IEIASEKPEKKEDWLSYLKNLQKSGILPPVKSETSSNHQPQPAVNQSKSGPINGGHRGGR
QNRNQPLSRWGGPTMPAPTQNLDPTPIGIGIEKRNAPPAAITDFNIRLLQIRYDSVVESL
MTKRADACKYCGMRLDDSQGKSKEWQDHMDWHVKQNLARHGSNTSSAEIPYRQWYPSSST
WLTSRASDQSNEQDAEKSDEPLPGVASSGVKTKECSVCGEKFDEYFDDDEETWRLRDTVN
INGRIVHSACASDATQSLENTIYLNDSDVKKEEPYDEDGN
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaattgaagcggcggcacgagattatcgtgaaacgttggcagagttgaaaaac
aacaacaaaacgcagatcaacctgctcacaattctagccgatgacttcaaagatgcatct
gcacaaattgttgatgtgattgagatgcatttgaatacatgttctccatcacaaaagcta
ccagtgatgtatgtctgcgattcgattttgaaaaatgtcggaaaacccaatgattatgat
acgctattcgcccggaaaatcataaacatgttcgagcatgtcttccgacagggaagcgag
gcaactcgagcagctttatacaaacttcgcgtcacctggggctctactggattgtttctt
ccgtcaaagctgtacggtctggatataaagatcaataagctcgacagtgcgtggcctatt
tcgaatccaaacaccggtcgggcacttcgtcatgatgcacaagttatgacatctcagaac
agacccccatcagctctgaccaatagtgctcctaatccacccactcgtgtttttgtgaat
ccgaaattcatcgatgctaacggacccgctaactctaccgcgaaaaagattgtggagaaa
acgaagtcaacaacgagcacgccagtcaaagaaaagcagatcaagaaagagccgaaacaa
gatcctctcgacaaacttcttccatcaacatcatctgggtctgcaaaaagttcagtttca
tctccagcaggatcgaaaagaaaatcaactccaattgagcatccccatgctccaaatcgc
aagaagaaccaaccagttcaatccctggacgaagatttaagaactataaacttgaccaac
aacaaagttgcacaaccgcaggatcaagacttcagaccaaaaaccttgaaaccaacatcc
gtggtagggtcacatgctttcgctgctggaactgtccctccacccgtaccgattacccaa
ccactcgctgctaatcatttcattccactaccacctactccagggcctgttactccattc
caccatattccacagcaacttccacctcaaccaccagtacaaacagctcgtatgggagga
caattcattcacaattctccaccacaagatccggccccaatggcaccgccaatgcaggtt
gttccaccaccacatcatcagcagcaagcacagcagaaaaacgtctatgcatcagagcag
acaaaacttgatgttcctgcgaataaccgcatatttgttgatggaaaagcatacgaagtt
atgtttgttgatgataccgcagttatcgaacgtgctggtgctccacatcgaatctatttc
gctggtacaccacgtaacttaattattgatggaactcctcacttgattccgttcgataaa
ccagttcaagtggatattcttggagcgaaacatgttgtgaaattcggagctccatctcgg
gaattgtatattggcgggcatccatttaaaggtcaattcggaggaccaccaattattgca
acaattaatgggcgtcgtcacgaaatccgtttgacgggaagtgctccagaagtacgtatt
gagccagaacctgcttaccatctcacgcatttcttacacaagatgcgagaagagaaaaag
attgaaatcgcatcggaaaaacctgagaagaaggaggactggttgtcgtatctcaaaaat
cttcagaaatctggaattttgccaccagtgaagtctgaaacatcgtctaatcatcaaccg
caaccagcagtcaatcagtcaaagtctggaccaatcaacggaggacatagaggaggtcgg
cagaatcgtaatcaaccactatctcgatggggaggtccgacgatgccagcacctacccag
aatcttgatccaactccaattggaataggtatagagaagcgaaatgctccgccagctgct
ataacggacttcaacatcagactcttgcaaattcgttatgattctgttgttgaatcattg
atgacgaaacgagcagatgcttgtaaatactgtggaatgcgtttagacgattctcaagga
aaatcaaaagaatggcaagatcatatggattggcacgttaagcaaaatttggctcgtcat
ggatctaatacgtcatcagctgaaattccataccgccagtggtatccatcttcatcaacg
tggctcacttcacgtgcatctgatcaatcaaacgaacaagatgcagaaaaatcagacgaa
ccactaccaggagtcgcttcttctggagtgaagacgaaagagtgttcagtttgtggtgag
aagtttgatgaatactttgatgatgatgaggagacgtggcgattaagagatactgttaac
attaatggaaggattgtacattctgcttgcgcgtcagatgcgactcaatcgttggaaaac
acgatatatctcaatgatagtgatgttaaaaaggaagaaccatacgatgaagatggaaat
tga
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