KEGG   Caenorhabditis remanei (nematode): GCK72_009941
Entry
GCK72_009941      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K10755  replication factor C subunit 2/4
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq03030  DNA replication
crq03410  Base excision repair
crq03420  Nucleotide excision repair
crq03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:crq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    GCK72_009941
   03410 Base excision repair
    GCK72_009941
   03420 Nucleotide excision repair
    GCK72_009941
   03430 Mismatch repair
    GCK72_009941
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:crq03032]
    GCK72_009941
   03036 Chromosome and associated proteins [BR:crq03036]
    GCK72_009941
   03400 DNA repair and recombination proteins [BR:crq03400]
    GCK72_009941
DNA replication proteins [BR:crq03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    GCK72_009941
  DNA Replication Termination Factors
   ELG1-RFC complex
    GCK72_009941
Chromosome and associated proteins [BR:crq03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    GCK72_009941
DNA repair and recombination proteins [BR:crq03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     GCK72_009941
  Check point factors
   HRAD17(Rad24)-RFC complex
    GCK72_009941
SSDB
Motif
Pfam: AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_5 Rad17 RuvB_N AAA_22 ResIII AAA_24 AAA_11 AAA_16 Mg_chelatase DEAD AAA_14 IstB_IS21 ABC_tran bpMoxR AAA_3 nSTAND3 AAA_7 RNA_helicase BBIP10 MCM Rep_fac_C AAA_assoc_2 AAA_lid_RFC1 DUF815 AAA_2 SLFN-g3_helicase AAA_30
Other DBs
NCBI-GeneID: 9807524
NCBI-ProteinID: XP_053587187
UniProt: A0A6A5H3W4
LinkDB
Position
III:complement(<8204738..>8206054)
AA seq 334 aa
MAEQIEVDNKKSKVLTWTEKYRPKTLDDIAHQDEVVTMLKGALQGKDLPHLLFYGPPGTG
KTSTALAFCRQLFPRNIFQDRVLDLNASDERGISVVRQKIQSFSKTSLSTNCKEDVLKLK
IIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPSE
VQVQRLRTICDAEETPMSNDELMQVMEYAEGDLRRAVCTLQSLAPILRSGDENARNCYLR
GSSDSALISNLCKSVRVSNVPQIISLTKSITKSCTGVAFMRHCFQQMLQENIINDENIAV
MGKLVATCEKRILDGCDLENNLLNFLLTLRETIQ
NT seq 1005 nt   +upstreamnt  +downstreamnt
atggccgagcaaatagaagtcgataacaaaaaaagcaaagtactcacatggactgaaaaa
tacagaccaaagacgcttgacgatatcgctcatcaggatgaagtagtcacaatgctgaaa
ggagctcttcaaggaaaagacttgccacaccttttgttttacggaccaccgggaactggt
aaaacgtcaactgcgctggccttctgtcgtcaacttttcccaagaaacatcttccaggac
cgcgtgctcgacttgaacgcttcggatgaacgtggaatttcggttgttcgacagaaaatt
caatcattctctaaaacatcgctgagtacaaattgcaaagaagacgttctgaaactgaag
attatcattcttgacgaagtcgacgctatgacacgagaagcacaagcagcaatgcgcaga
gttattgaagatttctctaaaactacgcgattcattctaatttgtaattatgtttctcgt
ctcatccctcccgttgttagtcgttgtgcaaagttcagattcaagtcactaccatcagaa
gttcaagtgcagagattgcgaacaatttgtgatgctgaagaaactccaatgagcaacgat
gagctcatgcaagtgatggagtatgcggaaggtgatttgagaagagctgtctgcacattg
caatcattggcgccaattctgagaagtggagatgaaaatgcacgaaactgctacctccgt
ggatcgtccgattctgctttgatttccaatctatgtaaatcagttcgagtctctaatgtg
cctcaaattatctcgttgactaaaagtatcacgaaatcgtgtactggggtcgcattcatg
cgtcattgcttccagcaaatgctccaagaaaacattatcaacgatgaaaatattgcagtg
atgggaaaactagttgcaacatgcgaaaagcgaattcttgatgggtgtgatctggagaac
aatcttctcaacttcttgcttactctccgtgagacaattcagtga

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