KEGG   Caenorhabditis remanei (nematode): GCK72_010107
Entry
GCK72_010107      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K11648  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq03082  ATP-dependent chromatin remodeling
crq03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:crq00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    GCK72_010107
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    GCK72_010107
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:crq01009]
    GCK72_010107
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:crq03021]
    GCK72_010107
   03036 Chromosome and associated proteins [BR:crq03036]
    GCK72_010107
Protein phosphatases and associated proteins [BR:crq01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     GCK72_010107
Transcription machinery [BR:crq03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     GCK72_010107
    SWI/SNF complex
     GCK72_010107
Chromosome and associated proteins [BR:crq03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    GCK72_010107
   PBAF complex
    GCK72_010107
   SWI/SNF complex
    GCK72_010107
SSDB
Motif
Pfam: SNF5 INI1_DNA-bd TdIF1_2nd
Other DBs
NCBI-GeneID: 9807469
NCBI-ProteinID: XP_003105940
UniProt: E3MD06
LinkDB
Position
III:complement(8776753..8778075)
AA seq 381 aa
MSSSTKTLSQTYGPRPQSFSLDETGEKYYIGSEIGAYLRLHRGTLYKKYPLLWRKVATSD
DKDKLKQIAMSNAFLHTNIMLLKAHEVDELLDGSEEKYRAAGAAPSTPRTEGVSRTVTKT
PAAAWGGQQVTSGSHHLESVPCSCPIAHSRGRMKHRELVYSAEDLEMSKKVMENAEEGED
LVPIRLDMELEGIKLRDTFCFNRNEKMVTPEMIAEIMCEDLDLPVAVFQPAITAAINQQL
EASTEAPPLDPNTCDQRAVLKLNINVGNQSLVDQFEWDMSDPQNSPEEFARNICKELGLG
GEFMSGIAYSIRGQLQWNQRTYAFSESPLATVDCPFRTATEVESWGPFLETLTDAEIEKK
MRDQDRNTRRMRRLVGGGFNY
NT seq 1146 nt   +upstreamnt  +downstreamnt
atgtcgagcagtactaagacactttctcaaacatatggcccacgcccgcagagtttcagt
ctcgacgagactggcgagaaatactacatcggttctgaaatcggtgcctacttgcgacta
catcgtggaacgctgtacaaaaaatatccattgctttggagaaaagtagctacttccgat
gacaaagacaaactgaaacaaatagcgatgtcaaatgcttttcttcacaccaatatcatg
cttttaaaagctcatgaagttgatgaacttttggacgggtccgaagaaaaatatcgtgct
gctggagctgcgccgtcaactcctcgaactgaaggagtttctcgaacagtaacgaaaact
cctgctgccgcttggggtggacaacaagttacgagtggttctcatcatctggaatcagtt
ccatgttcctgtccaattgctcactcacgcggccgcatgaagcatcgtgagctggtctac
tccgcagaagatttggaaatgtcgaaaaaagtcatggagaacgccgaagaaggggaagat
ctcgtgcccattcggttagatatggaattggagggaataaaacttcgcgacactttctgt
ttcaatagaaacgaaaaaatggtcactccagaaatgatagctgaaattatgtgcgaagac
cttgaccttccggttgccgtcttccagccggcgatcacagctgcaatcaatcagcagctt
gaagcatctacggaggctcctccgcttgatcccaacacgtgcgatcaaagagcagtactg
aaattgaatatcaatgttggaaatcaaagtcttgtagatcagtttgaatgggacatgtca
gatccacaaaatagtcccgaagagtttgcacggaacatttgtaaagagctcggtcttggt
ggtgaattcatgtctggaattgcgtattctatccgtggacagttacaatggaaccaaaga
acgtatgcgttttcggaaagtcctcttgccactgttgactgtcctttcaggacagcaaca
gaagtggagtcgtggggtccattccttgaaactttgactgacgctgaaatcgaaaagaaa
atgcgcgaccaagacagaaacaccagaagaatgcgccgccttgtcggtggaggattcaat
tattaa

DBGET integrated database retrieval system