KEGG   Caenorhabditis remanei (nematode): GCK72_010724
Entry
GCK72_010724      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K14792  rRNA biogenesis protein RRP5
Organism
crq  Caenorhabditis remanei (nematode)
Brite
KEGG Orthology (KO) [BR:crq00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:crq03009]
    GCK72_010724
Ribosome biogenesis [BR:crq03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    GCK72_010724
SSDB
Motif
Pfam: S1 HAT_Syf1_CNRKL1_C HAT_PRP39_N HAT_PRP39_C HAT_Syf1_CNRKL1_N TPR_14 Suf TPR_19 S1_RRP5 TPR_16 TPR_CcmH_CycH HAT_Syf1_M Nop14 ARM_TT21 CDC45
Other DBs
NCBI-GeneID: 9811163
NCBI-ProteinID: XP_003111806
UniProt: A0A6A5H7T9 E3LWX2
LinkDB
Position
III:complement(11118985..11125793)
AA seq 1753 aa
MVKLDEVTNEKYFPRGGGSDKPKPSKNSTSDFHSAKQGLKRKSAAPEQNEAKKVKEDSSW
FPKVEENCFIDGLTGLGVVAEVFEDGVVLHTAGTHTVKIHASEVSKKFTELFNAEKIEMK
DAFQVGQMIPFRVITKKTIGDKGKAKASCNPSKLNKHLSPNMLVAGLVINTSVISIEEKG
AILDVGLDQMTGFIEKSQFPASGLKEGLPLVVRILSTTSRVIKVTSFVEQDNLNMATCEK
LQLNHLMPGTILECEPTGDAVTAGVIVHIGNGLKGILPRRNLPPRLRENPEKLGKAIRAV
VMFCQQNSKILVLNAHPDIVAVSRIEKRTSFEGISIGDKVKCTVIDAIPTKSIVYFTLPP
TDGKKSLVTAVSSRGLLEKPDAVASEYEVGTEKLCRVIGFRYADRTITVSTRKDILNQKI
TTYQDAKCGDILDGRVHHVTKSGVYFMVCNFVKAFAPLSLLSDKPLTVPKIKSMFKVGTE
MKCRVWQICEQRKNLIVTCREQILALKGTSANTVEELEIGNTLPCVVRKVFDSGVILLAT
FNNISGVLRKESAIHLPATPKVNDFVIVNVEKIEENNRVIFVLRDANMNAALASGQNSEK
KLVQKAKPADAGVGVGKVYKGSLSAKKGEKANVTFMGDGNKEVYASVDDHLLSDLLEAPV
GLTKRLLMENKEEISRIIPMGKMAAINRACVKRSVTRFAKGMKLPKKFEDLKEEQVVLGV
VGQIITNIGVFVELVGGSGLVGKVFERKTAKSTCELLEVGQVIIGKIENIDSTKKSFWID
PCTDMENGERMLKQYALPLLESIVEEVKWLAEHSNYPSPGSKVDAKITKELDDLTLAEFE
HNGKKISAVVPKKAGEKEVAEKTPKKKKKSAKSFIVVDINHSRNEVILAAATTSEEARIV
AIRRDYLCAISSDGLIYLPTRLHPNHLPISDPKVKVHMIVDLSNKKSIGDGVFIATGGGG
DVDDVARTTLIKKEFIGNPKKEKKTEDGSEEGKVRSIKNFGVYEGTVIGHAKLEENRKRN
SLFVDIRLPGDNVGRLHVSEFPPNLLNSENPLEEFLTRNVNKKVIVRIIGFIKSAKGPKI
AELTMIPSKIQAGKVRAATLSYKSNYSVGDMIKCFGTATLTEKQQLKVEVNPVWIGSISR
ENVSEDLKITAADGGIVDFSLKKGEMRQAKVIAVDRKSMSMTLTLDTSEVESEFKIGSTV
TGRVFFVSKTYIRLKLSTGQQAVLTPTAITDKYESVEEVVEKQMAVGQLVDVVCAKIQDK
PKRHYVVLKSRYNSKTTNEKRKLILDNKLIKEGSQFDGIVENASKGSLFIEIGPGISGRI
PVNEENQDVLEIGTSSVVRVTVAKVHKNEIILKLDDTLIRKWTTKPERKRTSSKSDGVPS
KVALLEEEKTSETLEAEDPGFDWSNKGFRNEDLAAVGKLTSSNEKEEEEDVEDEEEDVSD
EEEEEGASDEEEVDDEEEEVNDEEDEESDDDEEKVDLIEKSEEEHSRLVRSDPNSAINWI
EYMSLFVEKSDLTAARKTAEEALEAINPTESEELLKMWTAFLNMEVAYGDSTTVEKVFQR
ACKNANAYTIHKTLAKIHQKFEKNAEATQILEQMVKKFRANKLEVWTLLAEHLMTQKDQK
AARDLLPRALKSAPNAQQHIQLISKFAQLEFKFGDAERGRTLLEGLVTAHPKKTDLWLVY
ADAALKHLGIEHARKILERACNLEMSVHKMRPLYKKWLEMESKHGDAAAVQLVKSKAEKF
LQAVADNVLEEDN
NT seq 5262 nt   +upstreamnt  +downstreamnt
atggttaaacttgatgaggtaacaaatgagaagtattttccgcgtggtggaggttctgac
aaaccaaagccatcaaagaactcaacttcagacttccattcagctaagcaaggactaaaa
agaaaatcagctgcgccagaacaaaatgaagccaaaaaagtgaaggaagactcttcatgg
ttcccaaaagttgaagagaactgctttatcgatggactcaccggtctcggtgtcgtcgca
gaggttttcgaggatggagttgtattgcatacagcaggaacacatactgtcaaaatccat
gcttctgaagtatcaaagaagtttactgaacttttcaacgcagagaaaattgaaatgaaa
gacgcattccaagtgggacaaatgattccatttcgagtaatcactaagaaaacaattgga
gacaaaggaaaagcaaaagcaagttgcaatccatcaaaactcaacaaacatctctcccca
aacatgttggtcgctggtcttgtaatcaacacttcagttatcagtattgaagagaaagga
gctattttggatgttggactggatcaaatgactggattcatcgagaagtcgcaatttcca
gcttccggattaaaagaaggattaccgcttgttgtaagaattctttctacaacctctcgt
gttatcaaagtgacctcgttcgttgaacaagacaatcttaatatggcaacttgtgagaaa
cttcaactcaatcacctaatgccaggaacaattcttgaatgcgaaccaactggagatgct
gtgacagctggagtcatcgttcatattggaaatggattgaaaggaatcttgccacgtcgt
aatcttccaccacgtctccgtgagaatccagagaaactcggaaaagccatccgagcagtt
gtgatgttctgtcaacagaattctaagattcttgttctcaacgcgcatccagatattgtc
gcagttagccgtatcgagaagcgtacgtctttcgaaggaatctcaattggagacaaagta
aaatgcactgttattgatgctattccaacaaaaagcattgtttatttcactcttccacca
actgatggaaagaaatcgcttgtaactgcagtatcatcacgtggccttctagagaagcct
gacgcagttgcttccgaatatgaagttggaacagagaaactttgccgagtcattggtttc
cgttatgctgaccgaacaattactgtctctacaagaaaggacattctcaatcagaaaatc
actacttatcaggatgcaaaatgcggagatattctcgatggtagagttcaccatgtgaca
aaaagtggtgtctactttatggtgtgtaacttcgtgaaagcgttcgccccgttgagtttg
ctctcggataaaccactcactgtcccaaaaatcaaaagtatgttcaaagtgggaacggaa
atgaaatgtcgtgtttggcaaatttgtgagcaacggaagaatctgattgtcacttgtcgc
gaacaaattcttgctctgaaaggaacatctgcgaacaccgtagaggaattagaaatcgga
aacacacttccctgtgtcgtcagaaaagtctttgattctggagtgattcttctcgctacg
ttcaataatatttcgggagttctccgaaaagagtctgcgattcacttgccggcaacaccg
aaagtgaatgatttcgttatcgttaatgtggaaaaaatcgaagagaacaatcgagtcatt
tttgttcttcgtgatgctaacatgaatgcagcattggcatctggacagaactctgagaaa
aaattggtccaaaaagcgaaaccagcagatgcaggagttggagtcggaaaggtgtacaag
ggatcactatcagcaaagaagggagagaaagcaaacgtcacttttatgggagacggcaat
aaggaggtctatgcttctgtcgatgatcatcttctctccgatcttctcgaggctccagtt
ggactcacaaaacgattgcttatggagaacaaggaagagattagtagaatcattccaatg
ggaaaaatggctgcaatcaatagagcatgtgtgaaaagatctgtgactcgttttgcgaaa
ggaatgaaattgccaaagaagttcgaagatttgaaagaagagcaagtggtattaggagtc
gttggacagatcatcacaaacatcggagtgtttgttgaacttgttggtggaagtggactt
gttggaaaagtttttgagagaaaaactgccaagagcacatgtgaacttctcgaagtcggt
caagtcatcatcggaaaaattgagaacattgattctacgaaaaagagtttctggattgat
ccatgtaccgatatggaaaatggagaacgaatgcttaaacagtacgcacttcctcttttg
gaatcaattgttgaagaagtgaagtggcttgccgagcactcaaattatccatcaccgggt
tcaaaagtcgatgctaagatcacaaaagaacttgatgacttaacacttgctgagttcgag
cataacggaaagaagatttctgcagttgtcccaaagaaggctggagaaaaagaagtggct
gagaaaactcctaagaaaaagaagaagtctgcgaaatcattcattgtagttgacatcaat
cattcgagaaatgaagtcattcttgctgctgctacaacttccgaggaagctcgaattgtt
gcaattcgtcgtgattatctttgtgcaatctcttctgatggtcttatctatctaccaact
agacttcatccaaatcatcttccaatatctgatccgaaagttaaagttcatatgattgtt
gatctgagcaacaagaaatcaattggtgatggtgtctttattgcaaccggaggtggtggt
gatgttgatgatgtcgcaagaactacactcatcaagaaagaatttattggaaacccgaaa
aaagagaagaagactgaagacggttctgaggaaggaaaagtcaggagcatcaaaaacttc
ggtgtctatgaaggaaccgtcatcggacatgcgaaacttgaagaaaatcgcaagagaaac
tcattgttcgtagatattcgccttcctggcgacaatgttggacgtctccatgtttcggag
ttcccaccaaatcttctgaattcggaaaatccactcgaagagttcctaactcgcaacgtg
aacaagaaagtcatcgttcgtattattggtttcatcaaaagtgccaaaggaccgaaaatc
gcggaacttaccatgattccatcgaaaattcaagccggaaaagttcgtgctgctactctc
tcctataaatccaactactcggtcggtgacatgatcaaatgcttcggaacagcgacatta
accgaaaaacaacagctgaaagtagaagtgaatccagtttggatcgggtcaatctctcgt
gaaaatgtctcggaggatctgaaaattactgctgctgatggtggaattgttgacttttca
ctcaaaaaaggagaaatgcgccaagcaaaagttatcgctgttgacaggaaaagcatgtca
atgactttaacactagatacctctgaagttgaatcggaattcaaaattggttcaactgtc
actggacgtgtcttctttgttagcaaaacatacattcgtctgaagctctctactggacaa
caagctgttttgacaccaactgcaattacagataaatatgaaagtgttgaagaagttgtt
gagaaacaaatggcagttggacaattggtcgatgtcgtttgtgctaagattcaagacaaa
ccaaagcgtcattatgtggttctcaaaagccgttacaactcaaaaactacaaatgagaag
agaaaattgatcctcgacaataagttgatcaaagaagggtctcagtttgatggaattgtg
gagaacgcttcaaagggatcacttttcatcgaaataggtccaggaatttctggaagaatt
ccggttaatgaggagaatcaggatgtcttggaaatcggcaccagcagtgtggttcgtgta
actgtcgctaaagtccacaaaaatgagattatcttgaaactcgacgatactctcatcaga
aaatggactactaagccagaaagaaaaagaacttcttcgaaaagtgatggtgttccatcg
aaggttgctctgctcgaagaggagaagacatctgaaactttggaagctgaagatccagga
tttgattggtcgaacaagggattcagaaatgaagatctggcggctgttggaaaattgaca
agcagtaatgaaaaggaagaggaagaagatgttgaagatgaagaggaagatgtcagtgat
gaggaagaagaagaaggtgcttctgatgaagaagaagttgacgatgaggaggaagaggtg
aatgatgaagaagacgaggaatctgatgatgacgaggagaaggttgatttgattgaaaag
tctgaagaagaacattcccgccttgttcgcagtgatccaaattctgcaatcaactggatc
gagtatatgagtctatttgtcgagaaatctgacttgacagctgcaaggaagactgcggaa
gaagctcttgaagccattaatccaactgaatccgaagaacttctgaaaatgtggactgca
ttcctgaacatggaagtcgcatatggagactctacaaccgttgagaaagtgttccagcgt
gcctgcaaaaacgccaacgcgtatacaatccacaaaactcttgccaaaattcatcaaaag
ttcgaaaagaatgcggaagctactcaaattttggagcagatggtcaagaagttccgtgct
aacaaattggaagtttggactctgctcgccgagcacttgatgactcaaaaggaccagaaa
gcggcgagagatcttctcccgagggcattgaaaagtgctccaaacgcacaacagcatatc
caactcatttccaaattcgctcaactggaattcaaattcggtgatgctgaacgtggaaga
actcttctcgaaggacttgtcactgctcaccccaaaaagactgatctttggctcgtttat
gctgatgctgcactcaaacatcttggcattgagcacgctcgtaaaattctcgagagagcc
tgtaatctcgagatgtctgttcataaaatgagaccattgtacaagaaatggttggagatg
gaaagcaagcatggagatgctgcagctgtccagttggttaaatcaaaagctgaaaagttt
ttgcaagctgttgctgacaatgtgttggaagaggacaattaa

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