Caenorhabditis remanei (nematode): GCK72_010724
Help
Entry
GCK72_010724 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K14792
rRNA biogenesis protein RRP5
Organism
crq
Caenorhabditis remanei (nematode)
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
crq03009
]
GCK72_010724
Ribosome biogenesis [BR:
crq03009
]
Eukaryotic type
90S particles
Other 90S particles
GCK72_010724
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1
HAT_Syf1_CNRKL1_C
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
Suf
TPR_19
S1_RRP5
TPR_16
TPR_CcmH_CycH
HAT_Syf1_M
Nop14
ARM_TT21
CDC45
Motif
Other DBs
NCBI-GeneID:
9811163
NCBI-ProteinID:
XP_003111806
UniProt:
A0A6A5H7T9
E3LWX2
LinkDB
All DBs
Position
III:complement(11118985..11125793)
Genome browser
AA seq
1753 aa
AA seq
DB search
MVKLDEVTNEKYFPRGGGSDKPKPSKNSTSDFHSAKQGLKRKSAAPEQNEAKKVKEDSSW
FPKVEENCFIDGLTGLGVVAEVFEDGVVLHTAGTHTVKIHASEVSKKFTELFNAEKIEMK
DAFQVGQMIPFRVITKKTIGDKGKAKASCNPSKLNKHLSPNMLVAGLVINTSVISIEEKG
AILDVGLDQMTGFIEKSQFPASGLKEGLPLVVRILSTTSRVIKVTSFVEQDNLNMATCEK
LQLNHLMPGTILECEPTGDAVTAGVIVHIGNGLKGILPRRNLPPRLRENPEKLGKAIRAV
VMFCQQNSKILVLNAHPDIVAVSRIEKRTSFEGISIGDKVKCTVIDAIPTKSIVYFTLPP
TDGKKSLVTAVSSRGLLEKPDAVASEYEVGTEKLCRVIGFRYADRTITVSTRKDILNQKI
TTYQDAKCGDILDGRVHHVTKSGVYFMVCNFVKAFAPLSLLSDKPLTVPKIKSMFKVGTE
MKCRVWQICEQRKNLIVTCREQILALKGTSANTVEELEIGNTLPCVVRKVFDSGVILLAT
FNNISGVLRKESAIHLPATPKVNDFVIVNVEKIEENNRVIFVLRDANMNAALASGQNSEK
KLVQKAKPADAGVGVGKVYKGSLSAKKGEKANVTFMGDGNKEVYASVDDHLLSDLLEAPV
GLTKRLLMENKEEISRIIPMGKMAAINRACVKRSVTRFAKGMKLPKKFEDLKEEQVVLGV
VGQIITNIGVFVELVGGSGLVGKVFERKTAKSTCELLEVGQVIIGKIENIDSTKKSFWID
PCTDMENGERMLKQYALPLLESIVEEVKWLAEHSNYPSPGSKVDAKITKELDDLTLAEFE
HNGKKISAVVPKKAGEKEVAEKTPKKKKKSAKSFIVVDINHSRNEVILAAATTSEEARIV
AIRRDYLCAISSDGLIYLPTRLHPNHLPISDPKVKVHMIVDLSNKKSIGDGVFIATGGGG
DVDDVARTTLIKKEFIGNPKKEKKTEDGSEEGKVRSIKNFGVYEGTVIGHAKLEENRKRN
SLFVDIRLPGDNVGRLHVSEFPPNLLNSENPLEEFLTRNVNKKVIVRIIGFIKSAKGPKI
AELTMIPSKIQAGKVRAATLSYKSNYSVGDMIKCFGTATLTEKQQLKVEVNPVWIGSISR
ENVSEDLKITAADGGIVDFSLKKGEMRQAKVIAVDRKSMSMTLTLDTSEVESEFKIGSTV
TGRVFFVSKTYIRLKLSTGQQAVLTPTAITDKYESVEEVVEKQMAVGQLVDVVCAKIQDK
PKRHYVVLKSRYNSKTTNEKRKLILDNKLIKEGSQFDGIVENASKGSLFIEIGPGISGRI
PVNEENQDVLEIGTSSVVRVTVAKVHKNEIILKLDDTLIRKWTTKPERKRTSSKSDGVPS
KVALLEEEKTSETLEAEDPGFDWSNKGFRNEDLAAVGKLTSSNEKEEEEDVEDEEEDVSD
EEEEEGASDEEEVDDEEEEVNDEEDEESDDDEEKVDLIEKSEEEHSRLVRSDPNSAINWI
EYMSLFVEKSDLTAARKTAEEALEAINPTESEELLKMWTAFLNMEVAYGDSTTVEKVFQR
ACKNANAYTIHKTLAKIHQKFEKNAEATQILEQMVKKFRANKLEVWTLLAEHLMTQKDQK
AARDLLPRALKSAPNAQQHIQLISKFAQLEFKFGDAERGRTLLEGLVTAHPKKTDLWLVY
ADAALKHLGIEHARKILERACNLEMSVHKMRPLYKKWLEMESKHGDAAAVQLVKSKAEKF
LQAVADNVLEEDN
NT seq
5262 nt
NT seq
+upstream
nt +downstream
nt
atggttaaacttgatgaggtaacaaatgagaagtattttccgcgtggtggaggttctgac
aaaccaaagccatcaaagaactcaacttcagacttccattcagctaagcaaggactaaaa
agaaaatcagctgcgccagaacaaaatgaagccaaaaaagtgaaggaagactcttcatgg
ttcccaaaagttgaagagaactgctttatcgatggactcaccggtctcggtgtcgtcgca
gaggttttcgaggatggagttgtattgcatacagcaggaacacatactgtcaaaatccat
gcttctgaagtatcaaagaagtttactgaacttttcaacgcagagaaaattgaaatgaaa
gacgcattccaagtgggacaaatgattccatttcgagtaatcactaagaaaacaattgga
gacaaaggaaaagcaaaagcaagttgcaatccatcaaaactcaacaaacatctctcccca
aacatgttggtcgctggtcttgtaatcaacacttcagttatcagtattgaagagaaagga
gctattttggatgttggactggatcaaatgactggattcatcgagaagtcgcaatttcca
gcttccggattaaaagaaggattaccgcttgttgtaagaattctttctacaacctctcgt
gttatcaaagtgacctcgttcgttgaacaagacaatcttaatatggcaacttgtgagaaa
cttcaactcaatcacctaatgccaggaacaattcttgaatgcgaaccaactggagatgct
gtgacagctggagtcatcgttcatattggaaatggattgaaaggaatcttgccacgtcgt
aatcttccaccacgtctccgtgagaatccagagaaactcggaaaagccatccgagcagtt
gtgatgttctgtcaacagaattctaagattcttgttctcaacgcgcatccagatattgtc
gcagttagccgtatcgagaagcgtacgtctttcgaaggaatctcaattggagacaaagta
aaatgcactgttattgatgctattccaacaaaaagcattgtttatttcactcttccacca
actgatggaaagaaatcgcttgtaactgcagtatcatcacgtggccttctagagaagcct
gacgcagttgcttccgaatatgaagttggaacagagaaactttgccgagtcattggtttc
cgttatgctgaccgaacaattactgtctctacaagaaaggacattctcaatcagaaaatc
actacttatcaggatgcaaaatgcggagatattctcgatggtagagttcaccatgtgaca
aaaagtggtgtctactttatggtgtgtaacttcgtgaaagcgttcgccccgttgagtttg
ctctcggataaaccactcactgtcccaaaaatcaaaagtatgttcaaagtgggaacggaa
atgaaatgtcgtgtttggcaaatttgtgagcaacggaagaatctgattgtcacttgtcgc
gaacaaattcttgctctgaaaggaacatctgcgaacaccgtagaggaattagaaatcgga
aacacacttccctgtgtcgtcagaaaagtctttgattctggagtgattcttctcgctacg
ttcaataatatttcgggagttctccgaaaagagtctgcgattcacttgccggcaacaccg
aaagtgaatgatttcgttatcgttaatgtggaaaaaatcgaagagaacaatcgagtcatt
tttgttcttcgtgatgctaacatgaatgcagcattggcatctggacagaactctgagaaa
aaattggtccaaaaagcgaaaccagcagatgcaggagttggagtcggaaaggtgtacaag
ggatcactatcagcaaagaagggagagaaagcaaacgtcacttttatgggagacggcaat
aaggaggtctatgcttctgtcgatgatcatcttctctccgatcttctcgaggctccagtt
ggactcacaaaacgattgcttatggagaacaaggaagagattagtagaatcattccaatg
ggaaaaatggctgcaatcaatagagcatgtgtgaaaagatctgtgactcgttttgcgaaa
ggaatgaaattgccaaagaagttcgaagatttgaaagaagagcaagtggtattaggagtc
gttggacagatcatcacaaacatcggagtgtttgttgaacttgttggtggaagtggactt
gttggaaaagtttttgagagaaaaactgccaagagcacatgtgaacttctcgaagtcggt
caagtcatcatcggaaaaattgagaacattgattctacgaaaaagagtttctggattgat
ccatgtaccgatatggaaaatggagaacgaatgcttaaacagtacgcacttcctcttttg
gaatcaattgttgaagaagtgaagtggcttgccgagcactcaaattatccatcaccgggt
tcaaaagtcgatgctaagatcacaaaagaacttgatgacttaacacttgctgagttcgag
cataacggaaagaagatttctgcagttgtcccaaagaaggctggagaaaaagaagtggct
gagaaaactcctaagaaaaagaagaagtctgcgaaatcattcattgtagttgacatcaat
cattcgagaaatgaagtcattcttgctgctgctacaacttccgaggaagctcgaattgtt
gcaattcgtcgtgattatctttgtgcaatctcttctgatggtcttatctatctaccaact
agacttcatccaaatcatcttccaatatctgatccgaaagttaaagttcatatgattgtt
gatctgagcaacaagaaatcaattggtgatggtgtctttattgcaaccggaggtggtggt
gatgttgatgatgtcgcaagaactacactcatcaagaaagaatttattggaaacccgaaa
aaagagaagaagactgaagacggttctgaggaaggaaaagtcaggagcatcaaaaacttc
ggtgtctatgaaggaaccgtcatcggacatgcgaaacttgaagaaaatcgcaagagaaac
tcattgttcgtagatattcgccttcctggcgacaatgttggacgtctccatgtttcggag
ttcccaccaaatcttctgaattcggaaaatccactcgaagagttcctaactcgcaacgtg
aacaagaaagtcatcgttcgtattattggtttcatcaaaagtgccaaaggaccgaaaatc
gcggaacttaccatgattccatcgaaaattcaagccggaaaagttcgtgctgctactctc
tcctataaatccaactactcggtcggtgacatgatcaaatgcttcggaacagcgacatta
accgaaaaacaacagctgaaagtagaagtgaatccagtttggatcgggtcaatctctcgt
gaaaatgtctcggaggatctgaaaattactgctgctgatggtggaattgttgacttttca
ctcaaaaaaggagaaatgcgccaagcaaaagttatcgctgttgacaggaaaagcatgtca
atgactttaacactagatacctctgaagttgaatcggaattcaaaattggttcaactgtc
actggacgtgtcttctttgttagcaaaacatacattcgtctgaagctctctactggacaa
caagctgttttgacaccaactgcaattacagataaatatgaaagtgttgaagaagttgtt
gagaaacaaatggcagttggacaattggtcgatgtcgtttgtgctaagattcaagacaaa
ccaaagcgtcattatgtggttctcaaaagccgttacaactcaaaaactacaaatgagaag
agaaaattgatcctcgacaataagttgatcaaagaagggtctcagtttgatggaattgtg
gagaacgcttcaaagggatcacttttcatcgaaataggtccaggaatttctggaagaatt
ccggttaatgaggagaatcaggatgtcttggaaatcggcaccagcagtgtggttcgtgta
actgtcgctaaagtccacaaaaatgagattatcttgaaactcgacgatactctcatcaga
aaatggactactaagccagaaagaaaaagaacttcttcgaaaagtgatggtgttccatcg
aaggttgctctgctcgaagaggagaagacatctgaaactttggaagctgaagatccagga
tttgattggtcgaacaagggattcagaaatgaagatctggcggctgttggaaaattgaca
agcagtaatgaaaaggaagaggaagaagatgttgaagatgaagaggaagatgtcagtgat
gaggaagaagaagaaggtgcttctgatgaagaagaagttgacgatgaggaggaagaggtg
aatgatgaagaagacgaggaatctgatgatgacgaggagaaggttgatttgattgaaaag
tctgaagaagaacattcccgccttgttcgcagtgatccaaattctgcaatcaactggatc
gagtatatgagtctatttgtcgagaaatctgacttgacagctgcaaggaagactgcggaa
gaagctcttgaagccattaatccaactgaatccgaagaacttctgaaaatgtggactgca
ttcctgaacatggaagtcgcatatggagactctacaaccgttgagaaagtgttccagcgt
gcctgcaaaaacgccaacgcgtatacaatccacaaaactcttgccaaaattcatcaaaag
ttcgaaaagaatgcggaagctactcaaattttggagcagatggtcaagaagttccgtgct
aacaaattggaagtttggactctgctcgccgagcacttgatgactcaaaaggaccagaaa
gcggcgagagatcttctcccgagggcattgaaaagtgctccaaacgcacaacagcatatc
caactcatttccaaattcgctcaactggaattcaaattcggtgatgctgaacgtggaaga
actcttctcgaaggacttgtcactgctcaccccaaaaagactgatctttggctcgtttat
gctgatgctgcactcaaacatcttggcattgagcacgctcgtaaaattctcgagagagcc
tgtaatctcgagatgtctgttcataaaatgagaccattgtacaagaaatggttggagatg
gaaagcaagcatggagatgctgcagctgtccagttggttaaatcaaaagctgaaaagttt
ttgcaagctgttgctgacaatgtgttggaagaggacaattaa
DBGET
integrated database retrieval system