KEGG   Caenorhabditis remanei (nematode): GCK72_010772
Entry
GCK72_010772      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K12861  pre-mRNA-splicing factor SPF27
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:crq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GCK72_010772
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:crq03041]
    GCK72_010772
   03400 DNA repair and recombination proteins [BR:crq03400]
    GCK72_010772
Spliceosome [BR:crq03041]
 Complex B
  Other components
   Prp19 complex
    GCK72_010772
 Complex C
   Prp19-CDC5 complex
    GCK72_010772
DNA repair and recombination proteins [BR:crq03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    GCK72_010772
SSDB
Motif
Pfam: BCAS2 TagH_SH3-like Endonuc-dimeris
Other DBs
NCBI-GeneID: 9812118
NCBI-ProteinID: XP_053587607
UniProt: A0A6A5H3S7
LinkDB
Position
III:<11299789..>11300708
AA seq 238 aa
MSAKPLALTGPGGANQLQDDQLLVDALPYLDTEYNETDRQLAMKLVEHECKTFRPTKNYL
THLPVPDYDAFLTPCMLKEMSRMKKKEEMEKLDLSRCELPPPSAVKGVDRKLWAKVLRNA
KAQNEHLMLRQINLELMDEYAAENYLQRNKLMESLLTQAEKELRITKEAVMEVHAARKMA
QLKAGDKVKQLEHSWVTMVTNNYRMEMENRQMESDNAKQIKRLKVDPSKLEDKEDQEN
NT seq 717 nt   +upstreamnt  +downstreamnt
atgagtgctaaaccattggcattgacgggtccaggtggagccaatcagttgcaagatgat
cagcttctcgtcgacgctctcccttaccttgacacagaatacaatgaaaccgatcgtcag
ttggctatgaagctcgtggaacacgagtgcaaaacattccgaccgacgaaaaattacttg
actcaccttccagttcccgattatgacgcattcttgactccttgtatgctgaaagaaatg
agtagaatgaagaaaaaagaggagatggagaagctggatttgagtcgatgcgagcttcca
ccaccatcagctgtcaagggagttgataggaagttgtgggcaaaggttctccgtaatgca
aaagcacaaaacgagcatctaatgcttcgtcaaattaatctggaactgatggacgaatat
gctgcggagaactatcttcaacgtaacaaactcatggaatcgcttctcactcaggctgaa
aaagagcttcgaatcacgaaagaagctgtcatggaggtgcatgcggcacgtaaaatggct
caattgaaagcaggagacaaagtgaaacaattggagcattcatgggtcacaatggttacc
aataactatagaatggagatggagaaccgacaaatggaaagcgacaatgctaaacaaatc
aaacggctgaaagtggatccgtcgaaattggaagacaaagaggatcaagaaaactga

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