Caenorhabditis remanei (nematode): GCK72_011731
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Entry
GCK72_011731 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCK72_011731
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crq03019
]
GCK72_011731
03016 Transfer RNA biogenesis [BR:
crq03016
]
GCK72_011731
Enzymes [BR:
crq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
GCK72_011731
Messenger RNA biogenesis [BR:
crq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GCK72_011731
Transfer RNA biogenesis [BR:
crq03016
]
Prokaryotic type
tRNA degradation factors
GCK72_011731
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
Motif
Other DBs
NCBI-GeneID:
9801789
NCBI-ProteinID:
XP_053588222
UniProt:
A0A6A5H8K0
LinkDB
All DBs
Position
III:<16882791..>16888964
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AA seq
740 aa
AA seq
DB search
MRIPQLPLRISKRFHSREYRLAGREQSVSVDFDGKNALELKSGHIARFASSAVVASSGDN
AVMATVVQKKEKQGDGNGVPLQVEYRPSASAIGRIPTNFLRKELSQSDTEILISRAIDRS
IRPLLPTNSYETQVICKPLALDENADQIMLGINAASTALHISSAPFSGPLAALRVTMSSR
GTFQINPTQEEIREASLDVIIAMKKNQKTIMIELDGKEVSAEHLEQACHVAFENVEKLHV
AMEKMAVGVEKDVLPTKNLEKIEKILRELVTERVYYVMTDSTHDKISRDQEIQKIYRDVV
ESKELQSHSPQDIYPCYSALVKQILRETVLNTGIRCDGRKITDFRPITIQVDMYKKLHGC
SMFQRGQTQVMSTVTFDSPTAAFHPDSVAQLLGSQRKKSFMLHYEFPSFAINEVGISRSS
NRREIGHGALAEKALKNLFPKDFPYATRLACQVLESNGSSSMASVCGGSLALFDAGVPMK
SAAAGVAIGLITDQNEPDSKYKVLTDILGIEDYAGDMDFKIAGTKNGFTAAQLDVKNDGL
TRQQLKESLQAARSGIDHVLSKMNIMRDRPREEFKTTVPIIQSIRIEPHKRVTLFRNNGY
NCKLIEAETGVKISAEDENNISLLAQNKQKLQKAMDMMGEVLETHGNLDFAFGSIVQAEI
VEIVDRGVFVTLPGSSQRIFMNNNHLSLNPIRHPEVLGLKIGDKMSTTWFGRDEHTGNIR
LSRRTLTGAAHPATAQKPKK
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgcgaattccacaactgccacttcgaatttccaagcgattccactcccgagaatatcgt
ctagccggtcgagaacaatcagtatctgtagattttgatgggaagaatgcgttggagttg
aagagtggtcacatcgccagatttgcgtcatccgccgtcgtcgcctcatctggagacaat
gccgtcatggctacagtagttcagaaaaaagagaaacaaggagacggtaatggagtacct
ctacaagtcgaatatcgcccatctgcatcagcaatcggccgaattcccaccaattttttg
cgaaaagaactgagtcaatcggatactgaaattctgatctccagagctattgacaggtcg
attaggccacttttgccaacgaattcctatgagactcaggtaatctgcaaaccgctggca
ctcgatgagaacgccgatcaaataatgttgggaatcaacgccgcctccacggcgcttcac
atctcctccgccccattctcaggccccctggcggctctccgtgtcacaatgtcgtcacgt
ggcacatttcaaatcaatccgacacaagaggagattcgagaagcttctctcgacgtgata
attgcaatgaaaaagaatcagaagacgattatgattgagttagacgggaaagaggtgtcc
gcggagcacttggagcaggcgtgccacgtggcttttgagaatgtggagaaactccacgtg
gcaatggaaaagatggcggtgggagtggagaaagatgtgttgccgacgaaaaatttggaa
aaaattgagaaaattctgagagaattggtcacggagagagtatattatgtgatgactgat
tcgacgcatgataagatttcgagggatcaagagattcagaagatttatcgagatgtggtg
gagagtaaagaactccaatcccacagccctcaggacatctacccatgctactctgccctc
gtcaaacagattctccgagagaccgttctcaacacaggcatccgttgtgatggccgaaag
atcacagattttcgaccaattaccattcaagtggacatgtataagaagctccatggatgc
tccatgtttcagagaggacagacacaagtcatgtctacagtaaccttcgattcacccacc
gccgcattccatccggattcggtggctcagttgttaggatcacagaggaagaagtcgttc
atgttgcactatgagttcccgagttttgcgattaatgaagttgggatctcgcgttcctcg
aatcgtcgtgaaatcggacatggtgcattggctgaaaaagctctcaaaaatctgttcccc
aaagattttccatatgcgacacgtcttgcttgccaagtacttgaatccaatggctcatcg
tcgatggcctctgtctgcggtggctcattggctcttttcgatgcgggtgtcccgatgaaa
agtgcggcggccggtgtggcgatcggattgattacagatcaaaatgagcccgattcgaag
tataaagtgctcaccgatattctgggaatcgaagattacgctggggatatggattttaag
atcgccggaacgaaaaatggcttcaccgccgcccaactcgacgtgaaaaacgatggactc
acacgtcaacagctgaaagagagtctccaggccgcccgttctggaatcgatcacgtctta
tcgaaaatgaatataatgagagatcgaccgcgtgaagagttcaaaactacagtacccatc
atccaatcgatacgaattgaaccgcataaacgtgtcactttgttccgaaataatggatat
aattgtaaattgatcgaggcggagaccggcgtgaagatttccgctgaagacgagaataac
atttccctgttggcacaaaacaagcaaaaactgcaaaaagcgatggatatgatgggagag
gtgctggagactcatggaaatttggactttgcgtttggatctattgtgcaggcggagatt
gtggagatcgtggaccgcggagtgtttgtcaccctgcctggcagctcccaacgtatcttt
atgaataacaaccatctgagtctcaacccaatccgacatcccgaagtactcggactgaaa
attggtgataaaatgagcacgacgtggttcggacgtgacgaacatactggaaatattcga
ttatcccggaggacgttgacaggcgcggcgcatccggcaactgctcagaaaccgaagaaa
taa
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