Caenorhabditis remanei (nematode): GCK72_011787
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Entry
GCK72_011787 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03022
Basal transcription factors
crq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
GCK72_011787
09124 Replication and repair
03420 Nucleotide excision repair
GCK72_011787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crq03021
]
GCK72_011787
03036 Chromosome and associated proteins [BR:
crq03036
]
GCK72_011787
03400 DNA repair and recombination proteins [BR:
crq03400
]
GCK72_011787
Enzymes [BR:
crq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
GCK72_011787
Transcription machinery [BR:
crq03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
GCK72_011787
Chromosome and associated proteins [BR:
crq03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
GCK72_011787
DNA repair and recombination proteins [BR:
crq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
GCK72_011787
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
nSTAND3
AAA_34
AAA_11
Motif
Other DBs
NCBI-GeneID:
9815990
NCBI-ProteinID:
XP_053588252
LinkDB
All DBs
Position
III:complement(17170136..17173547)
Genome browser
AA seq
755 aa
AA seq
DB search
MQLDIDGLKVLFPYDYVYPEQVLYMKEVKKALDANGHGLLEMPSGTGKTVSLLSLVLAYM
ISYPDRLDKLVYCSRTIPEIEKCVEEMKVLYDYWEKETGQPVAKITVAMSARKNLCINEK
VAALRFGNTVDSACQKLTASSVRAKRKENSEIEGCDYFENFEANSFPMQNGVWNLEDLRQ
LGRERKICPYFTARNAINRAHIVVYSYHYILDPKIAELVSKDFSRKSVVVFDEAHNIDNV
CIESMSVAISQKNADRALQELQNLEGVVGRMKSANSEKLQSEYDKLVEGLKRAERERAND
ERLANPCIPDDILKEAVPGNIRQANHFLLFLKRFVEYVRHRLRTHQVLIESPAAFMKDIQ
ERMCIERRPMRFCAERLANLVRTLEITDNGDVWALSQVTTMCTLVSTYSKGFSVIVEPQD
GSQMAMITLSCHDASIAIRPVLKRHQSVIITSGTLSPLEMYPKILDFDPAVVASFTMTLA
RPCLAPLVVARGNDQVAMTSRFEQRADVAVIRNYGNLVLEMASLVPDGMVVFFTSYLYME
NVIGVWYEQHIIDELMKYKLLFIETNDALETSAALEKYVEACDSGRGAVLFSVARGKVSE
GIDFSHHLGRCVIMLGIPYMYTESRVLRARLEYLRDTFGIRENDFLTFDAMRHTAQCMGR
ALRSKTDYGLMVFADKRFSRNDKRGKLPRWMQEYLEPASTNLSIDEAAQVARRWLTLMAQ
PFQKEHQLGVSLLNKEMVQDQQMMRRFERVVEYVD
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atgcagttggatatagacgggttaaaagtcctgttcccttacgattatgtgtatccggag
caggttttgtatatgaaagaggtcaagaaggcgcttgacgcgaatggtcatggcctcctc
gaaatgccgtcgggaactggaaaaaccgtttcactcctctcattagtcctcgcttatatg
atctcataccccgaccggctcgacaaactcgtctactgctctcgaacaattccagaaatt
gaaaaatgtgtcgaagagatgaaagttctctatgattactgggagaaggagaccggacag
ccagtcgccaaaatcacagtggcaatgagtgccagaaagaatttgtgtatcaatgaaaag
gtcgccgcgctgagattcggaaatactgtcgattcggcgtgtcagaaattgacggcgtcg
tccgtgagagctaagagaaaggagaattcggaaattgagggatgcgactattttgagaat
ttcgaggcgaacagttttccgatgcagaatggagtttggaatttggaagacctccgccaa
ctgggacgtgagcgcaaaatctgtccatacttcactgcccgtaacgccattaatcgtgct
cacatcgtcgtctactcctatcattatattctggatccgaaaattgctgaactcgtttcc
aaagattttagtagaaagtcagtagtcgttttcgacgaagcacataacatcgacaatgtt
tgcattgagtcaatgtcagtggcgatttcacagaaaaatgcggatcgagcgcttcaggag
cttcaaaacctcgaaggagtggttggaaggatgaaaagtgcaaattctgaaaaactacaa
tcagaatacgacaaattggtggaggggctgaaaagggctgaacgagaacgagccaacgac
gagagacttgcgaatccatgtattccggatgatattttgaaagaggcggtgcccggaaat
attcgacaagctaatcatttcttgttattcttgaaaagattcgtggaatatgtcaggcat
cggctgagaactcatcaggtactcatcgaaagtcctgccgctttcatgaaagacattcaa
gagagaatgtgtatcgagcgtcgtccaatgagattctgtgccgaacgtctcgcgaatctc
gttcgtacccttgaaatcacagataacggagacgtctgggcactctctcaagtcacaaca
atgtgtacgctggtctccacgtattctaaaggattttcggttattgtggagccacaagat
ggtagtcaaatggcaatgatcactctttcatgtcatgacgcttcgattgctattcggccg
gtactgaaacgacatcaatcggttatcatcacttctggaaccttatctccactggaaatg
tatccgaagattttggatttcgaccctgctgtcgtcgcatcgttcactatgactctggcg
agaccctgcttggctccgttagtggtggcacgcggaaatgaccaagtggcgatgacttcg
agattcgaacaacgtgccgacgtggcggtcattcgaaattatggaaacttagttctggaa
atggcctctctagtaccagatggaatggttgtatttttcaccagctatctatatatggag
aatgtcattggcgtttggtatgagcagcacattatcgatgagttgatgaagtacaaactg
ctgtttattgagacaaacgatgcgttggagacgtcggcggcgctcgagaaatacgtggaa
gcttgcgatagtggaagaggagcggtgctgttctctgtggcgagaggaaaagtttcggag
ggaatcgatttcagtcatcatttgggacgttgcgtcatcatgctcggaatcccttatatg
tacaccgagagtcgcgtgctcagagcaagattggagtatctcagagacacttttggtatc
agagagaacgactttctgacgttcgatgcaatgcgacacaccgcgcagtgtatgggaaga
gctcttcgctctaagacagactatggattgatggtgtttgctgataagagattctcccga
aacgacaaacgcggcaagctgcctcgctggatgcaagaatatctggagccggcttccact
aatttgagtatcgatgaggcggcacaggtggcgagacgatggttgacactgatggctcag
ccgttccagaaggaacatcagttgggtgtgtcgttgttgaataaggaaatggtgcaggat
cagcagatgatgagacgatttgaacgagttgttgaatatgttgattaa
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integrated database retrieval system
