Caenorhabditis remanei (nematode): GCK72_012553
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Entry
GCK72_012553 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
crq
Caenorhabditis remanei (nematode)
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crq03041
]
GCK72_012553
Enzymes [BR:
crq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GCK72_012553
Spliceosome [BR:
crq03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
GCK72_012553
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF5301
CMS1
AAA_19
DUF4136
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
9808371
NCBI-ProteinID:
XP_053583978
UniProt:
A0A6A5GLC1
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All DBs
Position
IV:complement(5927639..5934257)
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AA seq
944 aa
AA seq
DB search
MEFTEVIEVLDRGSSIDVQSKHTFESLMIGQKTLERLKAAQFDRPSPVQAKAIPVGLLGR
DMLVQAKSGTGKTLVFSVLAVENLDLRASYVQKIVITPTREISTQIKETMRKVAPPGART
SVYVGGCGHKLNMIDLKKTRPQIVIGTPGRIAQLLKLGAMDLSHVDFFVLDEADKLMDDV
FRDDINIIINSLPPIRQVAVFSATYPRNLDNLLSTFLRDAALVRFNADDVQLIGIKQYVV
TKCSPMLEKLTHVLKSIRYVQALVFCDQIAKCEPIASHLKSEGLDVTFVSSAMSQKDRQL
AVDQLRAKRVKILVSSDLTARGIDADNVNLVVNVDAAANEETYFHRIGRAARFGAHGAAV
TLLEDEKALKCFTALAYRGKVTVKRVARVENLPSDLAKNVDFWMDLPFFIDFEEKSKVIK
GPNDLEKVPERKEAVEALQRERGDSGASQYKYDRNGMLAMRLESQPTSSESQTSQVEKNS
VKEQDSPEEITKKVEEMSIEEKKQDEEPVVAPKKTFKERLAELKQAKKDEKKEMNETPKV
VEKTKFKFVPTREKAKKKYYMRGELQHIRDAFTDEQWRAYAESKFDFSQEPFLDAFGFRA
RRGSSPRIENGTGDSAGPSTSTSSGKVKKTGRKSPENSSKSSEKSESKALNIIKYSRYDM
KKIQKEVPKNQWLPYVKSKWDTSDEPWELDPSMRCPFEERLRRIRQKEKNERKKVIEERK
RQRDEDRSELVSFGTMTPRHEIKDTSWEGYKARLRKDFAEKTAKRKQDELEGKPRSLTRI
GPVVPARDPPHIYRYRLDMYTRRLAEQDAWLMQETRLQDGKIADAGIQTAIRELAELSCQ
TDPIKFEQDSEDVENKEDVDDEEYEYYDEEEEDEGEEYYEEEIEKDEFDPFGIPSYEQEL
RRHFGDSPQQVPYCEVAQEYLDYMNSFPRPPPRVDPNDPRYFLK
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atggagttcaccgaggtaatcgaggtattagaccgtggcagttctatagatgtccaatcg
aagcacacatttgagtctcttatgatcggccagaagacgttggaacgactcaaagccgcc
caattcgaccgcccatctccagttcaggcgaaagcgattccagtcggattgttgggaaga
gatatgttggttcaagccaaatcgggaactggaaaaacactcgttttctcagttttggca
gtcgaaaatctggatttgagagcttcttatgtacagaagatcgtcataacgccgactaga
gaaatatccacccagatcaaggagacgatgcgaaaagtcgcaccgcctggagcaagaact
tctgtctacgttggcggttgcggtcacaaactcaacatgatcgatctgaagaagactcgt
ccccaaatcgtcatcggaacaccgggacgcatagctcagcttttgaaactgggagccatg
gatttatcccatgtcgactttttcgtgctcgacgaggccgacaaattgatggatgatgtg
ttccgagatgatataaacatcatcatcaactcactcccaccaatccgccaagtcgccgta
ttttcggccacttatccgcgaaatctcgataatttattgtcgacatttcttagagatgcg
gcacttgttcggttcaatgcagacgacgtccaactcattggaatcaaacaatacgtcgtc
acaaaatgttcgccaatgttggaaaagttgacgcatgtgctgaaatcgattcgatatgtt
caggcattggtgttctgtgatcagattgcaaaatgcgagcccatcgcttcccatctgaaa
tccgaaggcctcgacgtcaccttcgtctccagtgcaatgtctcaaaaggaccgccaactc
gcagtcgatcaactccgcgcgaaacgtgtcaaaatcctcgtttcctccgatctaacagca
cgtggaatcgacgcggataacgtgaatctggtggttaacgtggacgcagctgccaacgag
gagacgtatttccacagaatcggacgggcggctcgattcggagcacacggagcggcggtg
actctgttggaagatgagaaggcgttgaagtgttttacggcactggcgtatcgtggaaaa
gtaacagtgaaacgagtggcgagagtagagaatttgccaagtgatttggcgaaaaatgtg
gatttctggatggatctcccgttttttattgatttcgaggagaaatcaaaagtgatcaag
ggaccgaatgacttggagaaagttcccgaaagaaaagaagcagtggaagcgcttcagaga
gaaagaggagattctggagcctcgcagtataaatatgatagaaatggaatgttggcgatg
agattggaatcgcaacccacgtcgtctgaatcgcagacgagtcaagtagagaagaactca
gtaaaggagcaagattctccagaagagatcaccaaaaaagtagaagaaatgagtatagaa
gagaaaaaacaagatgaggagccagttgtggcaccgaaaaagacgtttaaagaacgtctg
gcagagctgaaacaagcgaaaaaggatgagaaaaaggagatgaatgaaacaccgaaagtt
gtggaaaagactaagtttaaattcgtccccactcgcgagaaggccaaaaagaagtattac
atgcgtggagagctccaacacatccgtgacgccttcactgatgagcaatggcgtgcttat
gctgaatcaaagttcgattttagtcaggagccgttcctggatgcgtttggattcagagcg
agacgtggatcttcgccgagaatcgagaatggaacgggggattctgcgggaccgtcgaca
tcgacgtcttctggaaaagtcaagaaaactggtcgaaaatcgcccgagaactcatcaaaa
tcatctgaaaaaagcgagagtaaagcgttaaacattatcaaatacagccgctacgatatg
aagaaaatccaaaaagaagtgccaaaaaatcaatggcttccatatgtaaaatcgaaatgg
gacacttctgatgagccatgggaactcgatccatcgatgagatgtccgttcgaagaacga
ctccgacgaattcgtcaaaaagagaagaacgagagaaagaaagtgatagaagagcgaaaa
cgacagagagatgaggatcggagtgaacttgtttcatttggaacgatgactcctcgtcat
gagattaaggatacaagttgggagggttataaggcgagattgaggaaagattttgctgaa
aagacggctaagagaaagcaggatgagctggagggaaagccgagaagtttgacgagaatc
ggaccggtggtccctgctcgtgatccccctcacatctaccgttaccgtctggatatgtac
acacgacgtctcgctgaacaagacgcctggttgatgcaagagacacgacttcaagatgga
aaaattgcagacgctggaattcagacggcgattcgagaactggcggagctcagttgtcaa
accgatccgatcaaattcgagcaggattcagaagatgttgaaaataaagaagacgttgac
gatgaggagtacgagtattatgacgaagaagaagaggatgagggagaagagtattacgaa
gaagaaatcgagaaagacgaattcgatccatttgggattccgtcgtatgaacaagaactc
cgacgacattttggagattcgcctcaacaagttccatattgtgaagtcgctcaggaatac
ctggattatatgaattcgttcccgagacccccaccacgagtcgatccgaatgatccgaga
tactttttgaaatag
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