KEGG   Caenorhabditis remanei (nematode): GCK72_013146
Entry
GCK72_013146      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K14554  U3 small nucleolar RNA-associated protein 21
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:crq00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    GCK72_013146
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:crq03009]
    GCK72_013146
Ribosome biogenesis [BR:crq03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    GCK72_013146
SSDB
Motif
Pfam: Utp21 WD40_Prp19 WD40_WDHD1_1st ANAPC4_WD40 Beta-prop_EML_2 WD40_CDC20-Fz WD40 WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_WDR19_1st Beta-prop_DCAF4 Beta-prop_RIG_2nd Beta-prop_VPS8 Beta-prop_WDR35_TULP_N Beta-prop_Vps41 Beta-prop_NWD2_C Beta-prop_HPS5 Beta-prop_LRRK2 KNTC1_N PEP5_VPS11_N BBS2_Mid eIF2A Beta-prop_EIPR1 Beta-prop_WDR19_2nd Cytochrom_D1 WDR90_beta-prop_4th PQQ Beta-prop_IFT122_2nd Beta-prop_IP5PC_F Beta-prop_BBS7 PQQ_2 VPS11_N WD40_like Utp12 Carbpep_Y_N WD40_CFAP43
Other DBs
NCBI-GeneID: 9811859
NCBI-ProteinID: XP_003089491
UniProt: A0A6A5GQN1 E3NQ33
LinkDB
Position
IV:complement(10425203..10430185)
AA seq 930 aa
MKRIQSELFAPYRFMGVVTGDASPSIRSTFVGKKATLSVLCPIDNVIVQYNGKKLRAIGM
SDPLNDRITAVASSSSSVFAAAGNTISSLKFCRDVSDSIDIGAPVKMMTLIGTQLVAIDV
SSGIHVIETENDTFQMSLLMEGSDNFEITSICHPSTYLNKIVVGSSEGRLRIINIRTGKV
IHEFQRNFGSAITILEQTTALDVLAIGMANGEVLLFNVKLDKVLSTFRHDAKITNIAFRD
DGEAAMVTADQNGTIAVWDLEKQELIGKITGTHTNEINCLHFLAGEPIMLSASHDNSLRL
WIFDSADGMPRELIRLEGHSKPCASVKFVSKNEVLSAGKDGSVRKYDVTSLTMRQKLGSV
AQQKKGALPPNGNTEVQNVAEMAFGWQREAAWNNVFCRQVNDTKVTTWQTRNNTHGEFNL
EHDRFKKKVDFIDGTATALCVSPCGNFVYIGYSTGHIDQFNAQSGRHVHSFTNTTPSKSK
KKDSKRRAPKKSFIMSNGSLVNDTPAADSAITSLSIDQLGKELMSTDEEGHMVFWSIATK
KITARMFKKDVKLGISAPCPANSLVAVVSIAENGAESVILVDTVCHRVARAFETVGKKVN
AITFSSDGKWLLVADNESYIRVFDVATSQLIDVLLFSKPCISMSYSETGQYLATVHEGER
AIYTWFNKLLFAIHVNVKAHEPDYLPTWEGNEEDEIVDIDDEDEDDSTVMDLNLKTLKEL
QIDENLVTFSGLPSSRWANLPDLAMIKERNKPTDAPKKIKQAPFFLSAAATLDGFEFETE
NMEEEMNEDSTHIMSKRNLLELESSFTKVLRTAKTQENLLAAFKTLHEMSLSAIDFQIRA
LNPQTLPIFFRMLLEVLKTKNNFELVQAYAATALKTHRSIVWNATDEPEHQELSEVLEEM
AKYQRDSWNEMENLFVENMAVVQWIKNALL
NT seq 2793 nt   +upstreamnt  +downstreamnt
atgaagcgaatccagtcggagctgtttgctccataccgttttatgggagttgttactggt
gatgcctccccatcgattcgctcaacatttgtcggtaaaaaggcgacactatcggttctt
tgtccgattgacaacgtaatcgttcagtataatggaaagaaacttcgagcaatcggaatg
tcggatccattgaatgataggattactgcggtcgcttcatcgagctcatctgtgtttgcc
gccgccggaaacacaatctcctcactaaagttctgccgagacgtcagtgattcgatcgat
atcggagccccagtcaagatgatgacactcatcggaactcaactcgtcgccatcgacgtc
tcatctggaatccacgtcattgagactgaaaatgacacgtttcaaatgagtcttctcatg
gagggttctgataactttgagatcacttcaatctgtcatccgagcacttatttgaataaa
attgtcgtcggaagtagtgaaggacggctgagaattattaatatcagaactggaaaggtt
attcatgaattccaacgaaatttcgggtcggctatcacgattttggagcaaactactgct
ctggatgtgttggcaattggaatggccaatggagaagttctacttttcaatgtgaaattg
gataaggtgctcagcacgttcagacacgatgcaaagattacaaatattgcttttcgtgac
gacggcgaagcggctatggtaactgccgatcagaacggaacgatcgctgtttgggatctc
gaaaaacaggaattgattggaaaaatcacgggaactcacacgaatgagatcaattgtttg
cattttttggccggagaaccgattatgctctccgcctctcacgacaactctcttcgtctc
tggattttcgacagtgctgatggaatgccacgtgagttgattcgtctcgaaggacactcg
aaaccatgtgccagtgtcaagtttgtcagtaagaatgaggtactttccgctggaaaagac
ggttcagttcggaaatacgatgtgacatcgctgacgatgcgacagaaattgggatcggtt
gcgcagcagaaaaaaggcgcattaccaccaaacggcaacacagaagtccaaaatgtggcg
gaaatggcgttcggatggcagagagaagccgcgtggaataacgttttctgccgtcaagta
aatgacacgaaagtgacgacgtggcagacacgtaacaacactcacggagaattcaatttg
gagcacgatcgattcaagaagaaggtcgattttattgatgggacggcgacggctctctgt
gtttcgccgtgtggaaatttcgtgtatatcggatattcgacaggtcacatcgatcaattc
aacgctcaaagtggtcgccacgtgcactcgttcaccaacaccaccccatcgaaatccaag
aaaaaagattcgaaacgacgggcgcccaagaaaagttttatcatgtccaacggatctctc
gtaaacgacacgccagccgccgattcagccatcacatccctttcaatcgatcaactcgga
aaggaattgatgagtactgacgaggaaggacacatggtattctggtcgattgccacgaag
aaaatcacagcgagaatgttcaaaaaagacgtgaaactcggaatcagtgcaccgtgcccg
gcgaatagtctcgtcgcggttgtatcgattgcagagaacggagctgaaagtgtgattcta
gtggatacagtatgccatcgagtcgccagagcattcgagactgttggaaagaaagtgaat
gcaatcacgttctcttccgatggaaaatggttgctagtggctgataatgagtcttatatt
cgagttttcgatgtggccacttcccagttaatcgacgttttgttgttctccaaaccgtgt
atctcaatgtcatacagtgaaactggacagtatctggctacagtacacgagggggaacgt
gccatttacacgtggtttaataagcttctctttgcgattcatgtgaatgtgaaggctcat
gaaccggattacttgccgacttgggaaggaaacgaggaggatgaaattgtggatatagat
gatgaggatgaggacgactcgactgtaatggatctcaatctgaaaaccttgaaagagcta
caaatcgatgagaatcttgtcactttctcgggtcttccctcgtcgagatgggcgaatttg
ccggatttggcgatgattaaggagagaaataagccgacggatgcgccgaaaaagatcaaa
caagcgccgttcttcctctccgctgccgccacgttggatggtttcgagtttgagacggag
aatatggaggaggagatgaatgaagactcgacacatatcatgtcgaagaggaatttgttg
gagttggagagctcgtttaccaaagttctcagaaccgcaaaaacccaggaaaatctgctc
gccgccttcaagacactgcacgaaatgagtctttctgcaattgacttccagattcgagct
ctgaatccacaaactctcccgatctttttcagaatgttgttggaggtcctcaaaaccaaa
aacaacttcgaattggtccaagcctatgctgcgactgctctgaaaactcatcgttcgatt
gtatggaatgcgacggatgagccggagcaccaagagttgagtgaagtattggaagagatg
gccaaatatcaaagagacagttggaatgagatggagaatctgttcgtggagaatatggcg
gtcgttcagtggattaagaatgcattgctctaa

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