Caenorhabditis remanei (nematode): GCK72_013146
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Entry
GCK72_013146 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
GCK72_013146
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
crq03009
]
GCK72_013146
Ribosome biogenesis [BR:
crq03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
GCK72_013146
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Utp21
WD40_Prp19
WD40_WDHD1_1st
ANAPC4_WD40
Beta-prop_EML_2
WD40_CDC20-Fz
WD40
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_VPS8
Beta-prop_WDR35_TULP_N
Beta-prop_Vps41
Beta-prop_NWD2_C
Beta-prop_HPS5
Beta-prop_LRRK2
KNTC1_N
PEP5_VPS11_N
BBS2_Mid
eIF2A
Beta-prop_EIPR1
Beta-prop_WDR19_2nd
Cytochrom_D1
WDR90_beta-prop_4th
PQQ
Beta-prop_IFT122_2nd
Beta-prop_IP5PC_F
Beta-prop_BBS7
PQQ_2
VPS11_N
WD40_like
Utp12
Carbpep_Y_N
WD40_CFAP43
Motif
Other DBs
NCBI-GeneID:
9811859
NCBI-ProteinID:
XP_003089491
UniProt:
A0A6A5GQN1
E3NQ33
LinkDB
All DBs
Position
IV:complement(10425203..10430185)
Genome browser
AA seq
930 aa
AA seq
DB search
MKRIQSELFAPYRFMGVVTGDASPSIRSTFVGKKATLSVLCPIDNVIVQYNGKKLRAIGM
SDPLNDRITAVASSSSSVFAAAGNTISSLKFCRDVSDSIDIGAPVKMMTLIGTQLVAIDV
SSGIHVIETENDTFQMSLLMEGSDNFEITSICHPSTYLNKIVVGSSEGRLRIINIRTGKV
IHEFQRNFGSAITILEQTTALDVLAIGMANGEVLLFNVKLDKVLSTFRHDAKITNIAFRD
DGEAAMVTADQNGTIAVWDLEKQELIGKITGTHTNEINCLHFLAGEPIMLSASHDNSLRL
WIFDSADGMPRELIRLEGHSKPCASVKFVSKNEVLSAGKDGSVRKYDVTSLTMRQKLGSV
AQQKKGALPPNGNTEVQNVAEMAFGWQREAAWNNVFCRQVNDTKVTTWQTRNNTHGEFNL
EHDRFKKKVDFIDGTATALCVSPCGNFVYIGYSTGHIDQFNAQSGRHVHSFTNTTPSKSK
KKDSKRRAPKKSFIMSNGSLVNDTPAADSAITSLSIDQLGKELMSTDEEGHMVFWSIATK
KITARMFKKDVKLGISAPCPANSLVAVVSIAENGAESVILVDTVCHRVARAFETVGKKVN
AITFSSDGKWLLVADNESYIRVFDVATSQLIDVLLFSKPCISMSYSETGQYLATVHEGER
AIYTWFNKLLFAIHVNVKAHEPDYLPTWEGNEEDEIVDIDDEDEDDSTVMDLNLKTLKEL
QIDENLVTFSGLPSSRWANLPDLAMIKERNKPTDAPKKIKQAPFFLSAAATLDGFEFETE
NMEEEMNEDSTHIMSKRNLLELESSFTKVLRTAKTQENLLAAFKTLHEMSLSAIDFQIRA
LNPQTLPIFFRMLLEVLKTKNNFELVQAYAATALKTHRSIVWNATDEPEHQELSEVLEEM
AKYQRDSWNEMENLFVENMAVVQWIKNALL
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatccagtcggagctgtttgctccataccgttttatgggagttgttactggt
gatgcctccccatcgattcgctcaacatttgtcggtaaaaaggcgacactatcggttctt
tgtccgattgacaacgtaatcgttcagtataatggaaagaaacttcgagcaatcggaatg
tcggatccattgaatgataggattactgcggtcgcttcatcgagctcatctgtgtttgcc
gccgccggaaacacaatctcctcactaaagttctgccgagacgtcagtgattcgatcgat
atcggagccccagtcaagatgatgacactcatcggaactcaactcgtcgccatcgacgtc
tcatctggaatccacgtcattgagactgaaaatgacacgtttcaaatgagtcttctcatg
gagggttctgataactttgagatcacttcaatctgtcatccgagcacttatttgaataaa
attgtcgtcggaagtagtgaaggacggctgagaattattaatatcagaactggaaaggtt
attcatgaattccaacgaaatttcgggtcggctatcacgattttggagcaaactactgct
ctggatgtgttggcaattggaatggccaatggagaagttctacttttcaatgtgaaattg
gataaggtgctcagcacgttcagacacgatgcaaagattacaaatattgcttttcgtgac
gacggcgaagcggctatggtaactgccgatcagaacggaacgatcgctgtttgggatctc
gaaaaacaggaattgattggaaaaatcacgggaactcacacgaatgagatcaattgtttg
cattttttggccggagaaccgattatgctctccgcctctcacgacaactctcttcgtctc
tggattttcgacagtgctgatggaatgccacgtgagttgattcgtctcgaaggacactcg
aaaccatgtgccagtgtcaagtttgtcagtaagaatgaggtactttccgctggaaaagac
ggttcagttcggaaatacgatgtgacatcgctgacgatgcgacagaaattgggatcggtt
gcgcagcagaaaaaaggcgcattaccaccaaacggcaacacagaagtccaaaatgtggcg
gaaatggcgttcggatggcagagagaagccgcgtggaataacgttttctgccgtcaagta
aatgacacgaaagtgacgacgtggcagacacgtaacaacactcacggagaattcaatttg
gagcacgatcgattcaagaagaaggtcgattttattgatgggacggcgacggctctctgt
gtttcgccgtgtggaaatttcgtgtatatcggatattcgacaggtcacatcgatcaattc
aacgctcaaagtggtcgccacgtgcactcgttcaccaacaccaccccatcgaaatccaag
aaaaaagattcgaaacgacgggcgcccaagaaaagttttatcatgtccaacggatctctc
gtaaacgacacgccagccgccgattcagccatcacatccctttcaatcgatcaactcgga
aaggaattgatgagtactgacgaggaaggacacatggtattctggtcgattgccacgaag
aaaatcacagcgagaatgttcaaaaaagacgtgaaactcggaatcagtgcaccgtgcccg
gcgaatagtctcgtcgcggttgtatcgattgcagagaacggagctgaaagtgtgattcta
gtggatacagtatgccatcgagtcgccagagcattcgagactgttggaaagaaagtgaat
gcaatcacgttctcttccgatggaaaatggttgctagtggctgataatgagtcttatatt
cgagttttcgatgtggccacttcccagttaatcgacgttttgttgttctccaaaccgtgt
atctcaatgtcatacagtgaaactggacagtatctggctacagtacacgagggggaacgt
gccatttacacgtggtttaataagcttctctttgcgattcatgtgaatgtgaaggctcat
gaaccggattacttgccgacttgggaaggaaacgaggaggatgaaattgtggatatagat
gatgaggatgaggacgactcgactgtaatggatctcaatctgaaaaccttgaaagagcta
caaatcgatgagaatcttgtcactttctcgggtcttccctcgtcgagatgggcgaatttg
ccggatttggcgatgattaaggagagaaataagccgacggatgcgccgaaaaagatcaaa
caagcgccgttcttcctctccgctgccgccacgttggatggtttcgagtttgagacggag
aatatggaggaggagatgaatgaagactcgacacatatcatgtcgaagaggaatttgttg
gagttggagagctcgtttaccaaagttctcagaaccgcaaaaacccaggaaaatctgctc
gccgccttcaagacactgcacgaaatgagtctttctgcaattgacttccagattcgagct
ctgaatccacaaactctcccgatctttttcagaatgttgttggaggtcctcaaaaccaaa
aacaacttcgaattggtccaagcctatgctgcgactgctctgaaaactcatcgttcgatt
gtatggaatgcgacggatgagccggagcaccaagagttgagtgaagtattggaagagatg
gccaaatatcaaagagacagttggaatgagatggagaatctgttcgtggagaatatggcg
gtcgttcagtggattaagaatgcattgctctaa
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