Caenorhabditis remanei (nematode): GCK72_013330
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Entry
GCK72_013330 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K12881
THO complex subunit 4
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03013
Nucleocytoplasmic transport
crq03015
mRNA surveillance pathway
crq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GCK72_013330
09122 Translation
03013 Nucleocytoplasmic transport
GCK72_013330
03015 mRNA surveillance pathway
GCK72_013330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crq03019
]
GCK72_013330
03041 Spliceosome [BR:
crq03041
]
GCK72_013330
Messenger RNA biogenesis [BR:
crq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
GCK72_013330
TREX complex
GCK72_013330
Spliceosome [BR:
crq03041
]
Complex C
Other components
EJC/TREX
GCK72_013330
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
GCK72_013330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
9799158
NCBI-ProteinID:
XP_053584571
UniProt:
A0A6A5GQR6
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All DBs
Position
IV:11520190..11521053
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AA seq
226 aa
AA seq
DB search
MVKATPIDMALSDIISTKRKTKKGVKRPIKKSAGGIKKRGSFSNAGTPRRQSGGGQGGVR
KVIRKSVGGGSNDNRPVRINISNLAGTVLSSDLQELFNAFNLRKVSVNFNEDGTPAGTGD
LTLSKYNADRLIQKFAGVALDGKVMHFAVIETTNVKPTRKPEIRGTPNRRNSAGRPNNNK
KIVQKSPRNQNAARPAKKTQKPKREQKPQKTAAELDAELDAYMSRS
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaggcgactccaatcgacatggcactctccgacatcatctcgaccaagagaaag
accaagaaaggcgtgaaacgtccaatcaaaaagtcagccggaggaatcaaaaaacgagga
agtttctcaaacgccggtactcccagacgtcagagtggaggtggtcagggcggtgtacgg
aaagtgatccgcaagtctgtcggtggtggatcaaatgacaacagaccagtcagaatcaac
atttcgaatctcgccggcactgttttgtcgagcgatttgcaagaactcttcaacgcattc
aatcttcgtaaagtttccgtgaatttcaacgaggatggaactccagctggaaccggagat
ctcacgttgtccaagtacaacgccgatcgtcttattcagaagttcgccggtgtcgctctc
gatggaaaggtgatgcacttcgccgttatcgagacaaccaacgtcaaaccaacgagaaag
cccgaaatccgaggaaccccgaatcgcagaaactccgctggacgaccaaacaacaacaag
aaaatcgtacagaaatcaccaagaaatcagaacgccgcccggccagccaagaagactcag
aagccaaaacgtgagcagaaaccacagaagactgcggcggagttggacgccgagctcgac
gcctacatgtcccgctcctaa
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