KEGG   Caenorhabditis remanei (nematode): GCK72_013330
Entry
GCK72_013330      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K12881  THO complex subunit 4
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq03013  Nucleocytoplasmic transport
crq03015  mRNA surveillance pathway
crq03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:crq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GCK72_013330
  09122 Translation
   03013 Nucleocytoplasmic transport
    GCK72_013330
   03015 mRNA surveillance pathway
    GCK72_013330
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:crq03019]
    GCK72_013330
   03041 Spliceosome [BR:crq03041]
    GCK72_013330
Messenger RNA biogenesis [BR:crq03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     GCK72_013330
    TREX complex
     GCK72_013330
Spliceosome [BR:crq03041]
 Complex C
  Other components
   EJC/TREX
    GCK72_013330
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    GCK72_013330
SSDB
Motif
Pfam: FoP_duplication
Other DBs
NCBI-GeneID: 9799158
NCBI-ProteinID: XP_053584571
UniProt: A0A6A5GQR6
LinkDB
Position
IV:11520190..11521053
AA seq 226 aa
MVKATPIDMALSDIISTKRKTKKGVKRPIKKSAGGIKKRGSFSNAGTPRRQSGGGQGGVR
KVIRKSVGGGSNDNRPVRINISNLAGTVLSSDLQELFNAFNLRKVSVNFNEDGTPAGTGD
LTLSKYNADRLIQKFAGVALDGKVMHFAVIETTNVKPTRKPEIRGTPNRRNSAGRPNNNK
KIVQKSPRNQNAARPAKKTQKPKREQKPQKTAAELDAELDAYMSRS
NT seq 681 nt   +upstreamnt  +downstreamnt
atggtgaaggcgactccaatcgacatggcactctccgacatcatctcgaccaagagaaag
accaagaaaggcgtgaaacgtccaatcaaaaagtcagccggaggaatcaaaaaacgagga
agtttctcaaacgccggtactcccagacgtcagagtggaggtggtcagggcggtgtacgg
aaagtgatccgcaagtctgtcggtggtggatcaaatgacaacagaccagtcagaatcaac
atttcgaatctcgccggcactgttttgtcgagcgatttgcaagaactcttcaacgcattc
aatcttcgtaaagtttccgtgaatttcaacgaggatggaactccagctggaaccggagat
ctcacgttgtccaagtacaacgccgatcgtcttattcagaagttcgccggtgtcgctctc
gatggaaaggtgatgcacttcgccgttatcgagacaaccaacgtcaaaccaacgagaaag
cccgaaatccgaggaaccccgaatcgcagaaactccgctggacgaccaaacaacaacaag
aaaatcgtacagaaatcaccaagaaatcagaacgccgcccggccagccaagaagactcag
aagccaaaacgtgagcagaaaccacagaagactgcggcggagttggacgccgagctcgac
gcctacatgtcccgctcctaa

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