KEGG   Caenorhabditis remanei (nematode): GCK72_013860
Entry
GCK72_013860      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K03018  DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:crq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    GCK72_013860
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:crq03021]
    GCK72_013860
Enzymes [BR:crq01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     GCK72_013860
Transcription machinery [BR:crq03021]
 Eukaryotic type
  RNA polymerase III system
   RNA polymerase III
    Core subunits
     GCK72_013860
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 9828698
NCBI-ProteinID: XP_053584800
UniProt: A0A6A5GRX7
LinkDB
Position
IV:complement(13771898..13776717)
AA seq 1402 aa
MGKEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVGGKLQPANYGPLDPR
MGVSTKTGTCATCGLGLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLNP
EQHRVFSRQVMNPNIDYLHRKALHKRIVAACKKSSTCTQCGLKNGTVKKAVGTVLKIAFA
SPVPADELGKYATMFNANQEVGDHVKKMKFTLLNPLFVQKLFANVKQADIPVLMVRSGEE
KHPNDLLLTRMPVPPVCIRPSVVSEVKSGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSK
TLFETWEHLQIQCALYINSEMSGLPPDMQPKKAMRSFTQRLKGKQGRFRGNLCGKRVDFS
GRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDIHPGANYLVDK
KTGNKKLLKYGKRDELAKLLRLGDTVERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGR
TFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQD
FITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKIRIPPPAIRKPVELWTGKQLIEL
IIRPDKGSQISLNLTAKNKSYSGNLELCSKDSYVIIRNSVLLAGVLDKSLLGSSSKVNIF
YMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSERLLQEKGQLVDTGYEQC
AQYIRELEEGKLKAQPGCTEEETLEAIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCG
SKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTP
TEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGE
DGLDPAMMEAKDGSVVDFTHVLEHAKNIQTKKETPIPADKLEDVLKNEVQKQFKGKYPHF
AEQLKDYLLQTEIRKSKKWQNGKTHCSQHETAEENIREKCAKCKNMTEYRSLLLTNSCLT
KTQLHSFIQLCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGV
PRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYF
LLVKLNSKRIRLLQLEVSLESIAFAISTSKVCPMMRGCKIVAHGKTMMAIRPPSTSKLSK
TMTMQMLKYSLGNVVIKGISSVNRCVIHADEKKGDFYSLLVEGTDFRSVLSSVGVDPRKT
NFNNALVVAEVLGIEAARTCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRN
GLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKH
EKKAILKQNSPIFQRPETTITL
NT seq 4209 nt   +upstreamnt  +downstreamnt
atgggtaaagaacagtttcgcgaggccgataaagctttaaaagttgtcggagtaaaattc
gcgccgggagattgcgagtttatgagacagacggcacatgtgccgattttcaacaataaa
ctgtatgaagatgttggtggaaagctacaaccagctaattatggtccacttgatccaaga
atgggagtttctacaaaaactggaacatgtgctacatgtggacttggattgactgattgc
gttggtcatttcggctacttcgatctcgatgttccagtttttcacattggattctttaag
ctcacaattcagttacttcagtgcatttgcaaaaattgttcatcaattctgctcaatcca
gaacaacatcgtgtcttttctcgccaagttatgaatcccaatatcgactatttgcaccga
aaagctttacataaacgaattgttgcggcatgtaaaaagagctcgacttgcactcagtgt
ggattaaaaaacggcaccgtgaagaaagccgttggaaccgtcttaaaaattgctttcgca
agtccagttcctgctgatgaactcggaaaatatgcgacaatgttcaatgctaatcaagaa
gtcggcgatcatgttaagaaaatgaagtttacacttctcaatccactttttgtacaaaag
ttattcgccaatgtcaagcaagcggatattccggttctaatggtccgttcaggagaagaa
aaacacccaaacgacctcctattgactcgcatgcctgtgccacctgtatgtattcgacca
tcagttgtttctgaagtcaaatcaggaaccacggaagatgatgtcacaatgaaactgatg
gagattatgctgaccaatgatgttctgaaaaaacacaaacgggatggggcaccaagcaaa
actttgtttgaaacctgggagcatcttcaaattcaatgtgctctttatatcaactcagaa
atgtccggacttcctccagatatgcaaccaaaaaaagcaatgcgatcgttcactcaacgt
cttaaaggaaaacaaggtcgattccgtggaaatctttgcggaaaacgtgttgatttctct
ggtcgtactgttatttcacccgatccgaatcttcgaatcgatcaagttggtgttccaatt
cacgttgcaatgacattgactttccctgaaatagttaatgcatcgaacattgaaaaaatg
agacaactcgttatcaatggaagcgatattcatccaggagccaattatctggttgataag
aaaacaggaaacaagaagttgttgaaatacggaaaacgagatgagttggctaaacttcta
cgactcggtgatactgtggaacgtcatctggatgataacgacgttgttctgttcaatcgt
cagccttctcttcacaaaatttcaattatgagtcatcgcgcgaaggtaatgccgggaaga
acatttcgattcaatgagtgtgcatgtacaccatacaatgccgatttcgacggagacgaa
atgaatttgcatttgccacaaacatatgaagcgaaagctgaagcaagtgagctcatgaat
gtgaagaacaacttgatcacacctcgttctggagaaccattagttgctgccattcaagat
ttcattactggaggatacttgctcacccacaaagacactttccttccgagagctgaagtt
tatcgttttgctgctgcactcattgacgcctcagccaaaaaacagacaaaaataagaatt
ccaccaccagctatcagaaaaccagtggaactttggactggaaaacagctcatcgaactc
attattcgccccgacaaaggatctcagatctcactaaatcttactgcgaaaaataagtcg
tattcaggaaatttagagctgtgctcgaaagattcctatgttatcattcgaaattcggtt
ctcctggctggtgtcctggataagtctcttcttggatcttcatcaaaagtaaacattttc
tatatgttaatgagagattacggagaagatgcagctgttgatgcaatgtggaggttagca
cgaatggctccagtcttcctttcaaatcgaggattctccattggaatcggtgatgtacgc
cccagtgaaagattgcttcaagagaaagggcaactggttgacacaggttacgaacaatgc
gctcaatatattcgtgaattagaagaaggaaaactgaaagctcaaccaggttgcactgaa
gaagaaactcttgaagctatcattcttcgagaactttctacgattcgtgatcatgctgga
caagtgtgtcttcgtaatcttagcaagtataatgcgccattgactatggctgtatgtggt
tcgaagggttcttttatcaacatttctcaaatgattgcatgtgtcggacaacaggctatt
tctggacatcgaccaccggatggattcgaagagcgatctcttcctcatttcgagcgaaaa
aagaagacaccagaagctaaaggattcgtcgcgaacagtttctattcaggactcactcca
actgaattcttcttccatacaatgggaggacgtgaaggtcttgtcgatactgctgtaaag
actgccgaaactggatacatgcaaagacgtcttgtcaagtgtttggaggatctctgtgca
tcatacgacggcaccgtacgatcttctgttggagatgttatcgaattcgttttcggagaa
gatggtttagatccagcaatgatggaagctaaagatggaagtgttgttgatttcactcat
gtattggagcatgcgaagaatattcagacgaaaaaagagacaccgatcccagctgataaa
ctggaggatgttctgaagaacgaagttcaaaagcagttcaaaggaaaatatcctcacttt
gctgagcaactcaaggattatcttcttcaaactgaaattaggaagagtaaaaaatggcag
aatggaaaaactcactgttcacaacatgagacagctgaagagaatatcagagagaagtgt
gcaaagtgcaagaacatgactgaatacagatcgttacttctcactaattcgtgtttgaca
aaaactcaacttcacagtttcatacaattatgttactacaaggtggccagagccatcaca
gaaccaggaactgctgttggagcgattgctgccactagtattggagaaccatcgactcaa
atgaccctgaaaactttccatttcgccggtgttgcttctatgaacatcacacagggagtt
cccagaattaaggaaattatcaatgcggtcaagactatctcgaccccaattatcactgca
gcattgttggatccatatgatgaatcattggcaagacgagtaaaagctagaattgaaaag
acaactcttggagaaatctgtgattacatcgaagaagtctatctgccagacgactatttc
ttgctcgttaaactcaactctaaacgtatccgcctactgcaattagaagtttcactagaa
tctattgcctttgcaatttctacatcgaaagtttgtccgatgatgagaggatgcaagatt
gttgctcatggaaagacaatgatggcaattagaccaccttcaactagtaaattgagtaaa
acaatgacaatgcaaatgctcaaatactctctcgggaacgttgtcattaaaggaatctct
tcagtcaatcgttgtgtcatccacgctgacgaaaagaagggagacttttattcacttctt
gttgaaggaactgatttccgatctgttctttcttctgttggtgttgatccaagaaaaact
aatttcaataatgctcttgtggtagctgaagttcttggaattgaagctgctcggacatgc
attatcaatgaaattattgccactatggatgcccacggaatcggtttggatagaagacac
gtgatgcttctcgccgatgttatgacctatcgaggagaagtgctgggaatcactcgaaac
ggccttgtcaagatgaaggattcagttcttcttcttgcttcgttcgaaaaaacgatggat
catttgttcgaagcagccttcttctcgcagagagatgtgattcacggcgtttctgagtgc
atcattatgggaaccccgatgactgtcggtactggaaccttcaagttgatgcagaagcac
gaaaagaaagcaatactcaaacagaattcgccaatttttcagcgccccgagacaactatc
accctttaa

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